Os02g0553200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).
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Os02g0553200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid-bound ascorbate peroxidase (EC 1.11.1.11) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.93 | 0.364 | 13.7 | -2.79 | 0.164 | 1.06 | 0.533 | 0.596 | -1.13 | 2.13 | 29.56 | 21109 | -- | -- |
| 59.7 | 0.36 | 13.7 | -2.9 | 0.171 | 1.16 | 0.53 | -- | -1.24 | 1.64 | 30.45 | 19969 | -- | -- |
| 60.57 | 0.362 | 13.7 | -2.71 | 0.17 | 1.09 | -- | 0.741 | -1.16 | 1.19 | 29.56 | 19848 | -- | -- |
| 60.68 | 0.363 | 13.7 | -2.95 | 0.167 | 1.19 | -- | -- | -1.26 | 1.09 | 29.99 | 19918 | -- | -- |
| 62.34 | 0.368 | 13.7 | -2.77 | -- | 1.13 | -- | 0.599 | -1.19 | -- | 29.54 | 19843 | -- | -- |
| 95.65 | 0.459 | 13.6 | -2.42 | 0.223 | -- | 0.617 | -- | -0.754 | 1.59 | -- | -- | -- | -- |
| 97.13 | 0.462 | 13.6 | -2.44 | 0.223 | -- | -- | -- | -0.757 | 1.09 | -- | -- | -- | -- |
| 62.44 | 0.368 | 13.7 | -2.95 | -- | 1.21 | -- | -- | -1.27 | -- | 29.71 | 19847 | -- | -- |
| 187.24 | 0.637 | 13.5 | -- | 0.235 | -1.32 | -- | -- | -0.0891 | 0.87 | 8.199 | 47520 | -- | -- |
| 100.22 | 0.468 | 13.6 | -2.43 | -- | -- | -- | -- | -0.752 | -- | -- | -- | -- | -- |
| 254.17 | 0.746 | 13.6 | -- | 0.184 | -- | -- | -- | -0.485 | 0.552 | -- | -- | -- | -- |
| 153.43 | 0.577 | 13.6 | -- | -- | -1.16 | -- | -- | -0.841 | -- | 35.66 | 47520 | -- | -- |
| 256.3 | 0.747 | 13.6 | -- | -- | -- | -- | -- | -0.483 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.52 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 60.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 17 |
| 10 | 60.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 12 |
| 11 | 60.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 14 |
| 15 | 60.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 16 |
| 70 | 61.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 22 |
| 85 | 61.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 21 |
| 88 | 61.19 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 21 |
| 98 | 61.21 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 14 | NA |
| 129 | 61.27 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 7 |
| 130 | 61.27 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 7 |
| 131 | 61.27 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 7 |
| 135 | 61.28 | precipitation | 0.1 | 43200 | > th | dose dependent | no | NA | NA |
| 149 | 61.31 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 0 | NA |
| 216 | 61.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 225 | 61.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 268 | 61.79 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 272 | 61.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 273 | 61.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 312 | 61.96 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 313 | 61.96 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 316 | 61.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 12 |
| 317 | 61.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 321 | 61.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 322 | 61.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 439 | 62.15 | radiation | 40.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 443 | 62.16 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 18 | NA |
| 444 | 62.16 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 18 | NA |
| 449 | 62.16 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 465 | 62.19 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 484 | 62.22 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 487 | 62.23 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 20 |
| 489 | 62.24 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 499 | 62.26 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 520 | 62.30 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 524 | 62.31 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 5 |
| 537 | 62.31 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 18 |
| 571 | 62.36 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 573 | 62.37 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 578 | 62.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 580 | 62.37 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 583 | 62.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 621 | 62.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 18 |
| 630 | 62.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 18 |
| 634 | 62.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 18 |
| 663 | 62.48 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 780 | 62.67 | radiation | 10.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 786 | 62.68 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 848 | 62.74 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 947 | 62.79 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 988 | 62.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 9 |