FiT-DB / Search/ Help/ Sample detail

Os03g0285700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to L-ascorbate peroxidase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 15.4 (0.0185) R2 : 0.118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.305 (0.039) R2dN8 : 0.153 R2N8 : 0.118
σ : 0.349
deviance : 55.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.86 0.252 15.5 -0.00169 0.505 0.232 0.285 -2.92 0.229 21.9 24.9 862 -- --
31.03 0.261 15.4 0.51 0.547 0.127 -0.0414 -- 0.353 22.2 24.9 862 -- --
29.05 0.251 15.5 -0.0174 0.516 0.258 -- -3.21 0.247 21.8 26.18 899 -- --
30.21 0.256 15.4 0.56 0.541 -0.277 -- -- 0.341 22 35.06 1066 -- --
40.69 0.297 15.5 -0.166 -- 0.634 -- -3.52 0.173 -- 24.57 762 -- --
31.29 0.262 15.4 0.529 0.532 -- -0.0359 -- 0.364 21.8 -- -- -- --
31.29 0.262 15.4 0.53 0.532 -- -- -- 0.364 21.8 -- -- -- --
44.83 0.312 15.4 0.472 -- 0.356 -- -- 0.315 -- 24.3 717 -- --
38.46 0.289 15.5 -- 0.546 -0.0756 -- -- 0.3 22 33.57 1087 -- --
48.21 0.324 15.4 0.536 -- -- -- -- 0.364 -- -- -- -- --
38.71 0.291 15.5 -- 0.534 -- -- -- 0.305 21.9 -- -- -- --
50.06 0.33 15.4 -- -- 0.44 -- -- 0.268 -- 24.1 738 -- --
55.79 0.349 15.4 -- -- -- -- -- 0.305 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.82 temperature 25.0 1440 > th dose dependent rect. 7 1
2 27.93 temperature 25.0 1440 > th dose dependent rect. 5 5
17 28.13 wind 9.0 720 > th dose independent rect. 18 8
25 28.14 wind 1.0 43200 > th dose independent rect. 23 2
32 28.16 wind 9.0 720 > th dose independent rect. 18 5
39 28.20 wind 9.0 720 > th dose dependent rect. 18 8
48 28.23 wind 9.0 720 > th dose dependent rect. 18 5
52 28.25 wind 1.0 43200 > th dose independent rect. 21 5
58 28.30 wind 1.0 14400 < th dose independent rect. 20 6
60 28.32 wind 1.0 43200 > th dose independent rect. 19 7
67 28.35 wind 9.0 1440 > th dose independent rect. 18 2
69 28.38 temperature 25.0 1440 > th dose independent rect. 7 2
70 28.38 precipitation 0.1 270 > th dose independent rect. 2 2
72 28.38 precipitation 0.1 270 > th dose dependent rect. 2 2
85 28.42 temperature 25.0 1440 > th dose independent rect. 5 5
87 28.43 wind 1.0 43200 < th dose independent rect. 23 2
89 28.43 wind 3.0 43200 < th dose dependent rect. 10 1
91 28.45 temperature 25.0 1440 < th dose independent rect. 7 2
105 28.48 wind 7.0 720 > th dose dependent rect. 20 1
111 28.49 wind 9.0 43200 > th dose dependent rect. 16 1
112 28.50 temperature 20.0 1440 < th dose independent rect. 4 2
115 28.51 temperature 25.0 1440 < th dose independent rect. 6 4
128 28.55 wind 1.0 43200 > th dose independent rect. 21 1
129 28.55 temperature 20.0 1440 > th dose independent rect. 4 1
152 28.59 temperature 25.0 720 > th dose dependent rect. 16 20
153 28.60 wind 1.0 43200 > th dose independent rect. 10 1
157 28.60 temperature 25.0 1440 > th dose dependent sin 8 NA
167 28.62 wind 7.0 720 > th dose independent rect. 20 1
172 28.62 wind 1.0 43200 < th dose dependent rect. 19 3
188 28.65 wind 1.0 43200 < th dose independent rect. 21 1
191 28.65 temperature 20.0 4320 > th dose dependent rect. 20 1
193 28.65 temperature 20.0 4320 > th dose dependent rect. 20 3
199 28.66 wind 1.0 43200 < th dose independent rect. 19 3
237 28.70 wind 9.0 43200 > th dose independent rect. 16 2
242 28.70 wind 9.0 720 > th dose dependent rect. 20 14
282 28.74 wind 9.0 720 > th dose independent rect. 21 13
314 28.77 wind 1.0 43200 < th dose independent rect. 10 1
319 28.77 precipitation 0.1 270 > th dose independent rect. 23 5
321 28.77 temperature 20.0 270 > th dose independent rect. 15 15
326 28.77 precipitation 0.1 270 > th dose dependent rect. 23 5
331 28.77 wind 1.0 43200 < th dose dependent rect. 13 13
336 28.78 temperature 20.0 43200 < th dose independent rect. 1 1
343 28.78 wind 1.0 14400 < th dose dependent rect. 22 3
350 28.78 wind 1.0 43200 < th dose dependent rect. 16 10
363 28.79 temperature 20.0 720 > th dose dependent sin 16 NA
378 28.79 temperature 20.0 720 > th dose dependent rect. 12 18
381 28.80 wind 9.0 43200 > th dose independent rect. 21 1
382 28.80 wind 9.0 43200 < th dose independent rect. 21 1
384 28.80 wind 1.0 43200 > th dose independent rect. 19 3
404 28.81 wind 1.0 43200 < th dose independent rect. 19 1
405 28.81 temperature 20.0 43200 > th dose independent rect. 1 1
406 28.81 temperature 20.0 43200 > th dose independent rect. 23 1
422 28.81 precipitation 0.1 270 > th dose independent rect. 2 7
431 28.81 precipitation 0.1 270 > th dose dependent rect. 2 7
443 28.82 temperature 20.0 4320 > th dose independent rect. 21 3
468 28.83 temperature 30.0 1440 > th dose independent rect. 11 3
479 28.83 wind 1.0 43200 < th dose dependent sin 17 NA
481 28.83 wind 7.0 720 > th dose dependent rect. 21 8
496 28.84 temperature 20.0 4320 > th dose independent rect. 23 1
497 28.84 precipitation 0.1 43200 < th dose independent rect. 18 1
512 28.84 precipitation 0.1 43200 < th dose dependent rect. 18 1
515 28.84 wind 1.0 14400 < th dose dependent rect. 20 5
519 28.84 temperature 20.0 30 > th dose dependent rect. 18 10
529 28.85 wind 1.0 43200 > th dose independent rect. 19 1
532 28.85 temperature 25.0 4320 > th dose independent rect. 17 1
550 28.85 temperature 20.0 720 > th dose dependent rect. 18 1
555 28.85 wind 7.0 720 > th dose dependent rect. 21 5
564 28.85 temperature 15.0 270 > th dose dependent rect. 16 13
576 28.86 radiation 40.0 43200 < th dose independent rect. 16 5
585 28.86 radiation 40.0 43200 < th dose independent rect. 16 15
609 28.87 precipitation 0.1 43200 > th dose independent rect. 18 1
620 28.87 humidity 80.0 270 < th dose independent rect. 18 21
625 28.87 temperature 20.0 1440 > th dose dependent rect. 1 1
626 28.87 humidity 50.0 43200 < th dose dependent rect. 8 1
657 28.88 radiation 20.0 43200 < th dose independent rect. 17 4
673 28.88 wind 7.0 270 > th dose independent rect. 22 11
675 28.88 humidity 50.0 43200 > th dose independent rect. 22 11
683 28.88 wind 9.0 43200 > th dose dependent rect. 1 1
700 28.89 wind 9.0 43200 > th dose independent rect. 1 1
706 28.89 radiation 10.0 4320 < th dose independent rect. 18 3
732 28.89 precipitation 0.1 270 > th dose independent rect. 23 10
781 28.89 precipitation 0.1 270 > th dose dependent rect. 23 10
804 28.90 wind 5.0 720 > th dose independent rect. 22 1
806 28.90 temperature 25.0 4320 < th dose independent rect. 17 1
807 28.90 humidity 50.0 43200 > th dose independent rect. 8 1
827 28.90 atmosphere 1000.0 30 > th dose independent rect. 20 8
854 28.90 precipitation 0.1 43200 > th dose dependent rect. 18 1
861 28.90 wind 1.0 14400 < th dose dependent rect. 19 7
870 28.90 humidity 50.0 43200 < th dose dependent rect. 16 18
873 28.91 wind 1.0 43200 > th dose independent sin 15 NA
875 28.91 atmosphere 1010.0 14400 < th dose independent rect. 23 1
877 28.91 wind 9.0 43200 < th dose independent rect. 16 2
887 28.91 humidity 50.0 43200 < th dose independent rect. 4 5
907 28.91 wind 1.0 14400 < th dose dependent rect. 19 9
959 28.92 humidity 50.0 43200 < th dose dependent rect. 17 16
965 28.93 temperature 20.0 4320 < th dose independent rect. 21 4
979 28.93 wind 7.0 720 < th dose independent rect. 19 16
980 28.93 wind 9.0 43200 > th dose dependent rect. 21 1
999 28.94 temperature 20.0 43200 > th dose independent sin 11 NA