Os08g0549100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxisome type ascorbate peroxidase.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0549100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Peroxisome type ascorbate peroxidase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.91 | 0.14 | 14.6 | 0.172 | 0.614 | -0.598 | -0.11 | 0.0757 | 0.0289 | 0.973 | 20 | 1396 | -- | -- |
| 8.92 | 0.139 | 14.6 | 0.153 | 0.613 | -0.595 | -0.108 | -- | 0.0225 | 0.972 | 19.99 | 1396 | -- | -- |
| 8.94 | 0.139 | 14.6 | 0.179 | 0.645 | -0.616 | -- | 0.105 | 0.0309 | 0.98 | 20.18 | 1277 | -- | -- |
| 8.94 | 0.139 | 14.6 | 0.152 | 0.647 | -0.611 | -- | -- | 0.0207 | 1 | 20.03 | 1276 | -- | -- |
| 15.86 | 0.185 | 14.6 | 0.24 | -- | -1.02 | -- | 0.324 | 0.127 | -- | 19.21 | 4 | -- | -- |
| 19.74 | 0.208 | 14.7 | -0.0706 | 0.566 | -- | -0.155 | -- | -0.117 | 0.831 | -- | -- | -- | -- |
| 19.84 | 0.209 | 14.7 | -0.065 | 0.567 | -- | -- | -- | -0.116 | 0.859 | -- | -- | -- | -- |
| 15.45 | 0.183 | 14.6 | 0.181 | -- | -1.13 | -- | -- | 0.0677 | -- | 17.4 | 2 | -- | -- |
| 9.44 | 0.143 | 14.6 | -- | 0.66 | -0.571 | -- | -- | -0.00203 | 0.906 | 20.49 | 1208 | -- | -- |
| 39.88 | 0.295 | 14.7 | -0.0442 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 19.96 | 0.209 | 14.7 | -- | 0.566 | -- | -- | -- | -0.109 | 0.854 | -- | -- | -- | -- |
| 16.25 | 0.188 | 14.6 | -- | -- | -1.06 | -- | -- | 0.0414 | -- | 17.84 | 2 | -- | -- |
| 39.93 | 0.295 | 14.6 | -- | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 5 | 8.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 10 | 8.80 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 14 | 8.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 25 | 8.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 59 | 8.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 102 | 8.92 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 110 | 8.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 112 | 8.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 135 | 8.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 23 |
| 159 | 8.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 205 | 9.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 217 | 9.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 537 | 9.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 542 | 9.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 586 | 9.17 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 617 | 9.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 735 | 9.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 798 | 9.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 921 | 9.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |