BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0524800 Os09g0524800|AK105833
(334 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0524800 Ubiquitin domain containing protein 509 e-145
Os08g0546100 Ubiquitin domain containing protein 335 2e-92
Os06g0126500 Ubiquitin domain containing protein 261 4e-70
Os04g0619900 Ubiquitin domain containing protein 174 8e-44
Os01g0831200 Ubiquitin domain containing protein 144 1e-34
Os01g0907200 Ubiquitin domain containing protein 100 1e-21
AK058550 100 1e-21
Os02g0597700 Ubiquitin domain containing protein 93 2e-19
>Os09g0524800 Ubiquitin domain containing protein
Length = 334
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/334 (78%), Positives = 263/334 (78%)
Query: 1 MMRAKAKGTFXXXXXXXXXXXXXXXXXXXXXXXREDEWEVRPGGMLVQKRSPDGDAPAAP 60
MMRAKAKGTF REDEWEVRPGGMLVQKRSPDGDAPAAP
Sbjct: 1 MMRAKAKGTFPPAAAAMKESSAPPPPAAAAAAAREDEWEVRPGGMLVQKRSPDGDAPAAP 60
Query: 61 VPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDM 120
VPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDM
Sbjct: 61 VPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDM 120
Query: 121 AGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISRISLDVDKLATKVTALEAIVG 180
AGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISRISLDVDKLATKVTALEAIVG
Sbjct: 121 AGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISRISLDVDKLATKVTALEAIVG 180
Query: 181 KGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAA 240
KGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAA
Sbjct: 181 KGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAA 240
Query: 241 SHNKASGNGHAKPRAPHLPPPVSQRRQFQXXXXXXXXXXXXXXXXXXXXXXSWESFDLLX 300
SHNKASGNGHAKPRAPHLPPPVSQRRQFQ SWESFDLL
Sbjct: 241 SHNKASGNGHAKPRAPHLPPPVSQRRQFQAPPPAAPTTTKTAAAPAPPPTASWESFDLLS 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXIPRFDWELF 334
IPRFDWELF
Sbjct: 301 SMPSTSSSTVTTTMAAATTTTTTSPIPRFDWELF 334
>Os08g0546100 Ubiquitin domain containing protein
Length = 501
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 167/201 (83%), Positives = 187/201 (93%), Gaps = 2/201 (0%)
Query: 34 REDEWEVRPGGMLVQKRSPDGDAP--AAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQ 91
+E+ WEVRPGGMLVQKRSP+ + P APVPTIRVKVK+NGVYHEIYINSQASFGELKK
Sbjct: 206 KEEVWEVRPGGMLVQKRSPESEPPPGGAPVPTIRVKVKYNGVYHEIYINSQASFGELKKL 265
Query: 92 LSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKA 151
LS TGLHP+DQK+VY+DKERDSKAFLD+AGVKDRSKM+LLEDPTAQAKRLLE+RR KA
Sbjct: 266 LSEKTGLHPDDQKVVYRDKERDSKAFLDIAGVKDRSKMLLLEDPTAQAKRLLEERRHCKA 325
Query: 152 ERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEG 211
ERAAKS+SR++LDVDKLA+KV+ALEAIV KGGRVVDADVV LTEALMNELVKLD+IAA+G
Sbjct: 326 ERAAKSVSRVALDVDKLASKVSALEAIVSKGGRVVDADVVALTEALMNELVKLDSIAADG 385
Query: 212 EVKVQRRMQEKRVQKYVESLD 232
EVK QRR+QEKRVQKYVE+LD
Sbjct: 386 EVKEQRRVQEKRVQKYVEALD 406
>Os06g0126500 Ubiquitin domain containing protein
Length = 339
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/209 (66%), Positives = 172/209 (82%), Gaps = 3/209 (1%)
Query: 35 EDEWEVRPGGMLVQKRSPDGD---APAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQ 91
E+ WEVRPGGMLVQKR D PVPTIRVKVK G+ HEIYINSQASFGELKK
Sbjct: 46 EEVWEVRPGGMLVQKRGGGADEEPVNVKPVPTIRVKVKHAGITHEIYINSQASFGELKKM 105
Query: 92 LSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKA 151
++A TGLHP+DQK++YKDKERDSKAFLDMAGVKDRSK+V++EDP A+A+RL+E+RR
Sbjct: 106 VAARTGLHPDDQKVMYKDKERDSKAFLDMAGVKDRSKLVVVEDPEARARRLIEERRNGHL 165
Query: 152 ERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEG 211
E+AAK+++ ++ +VDKLA KV AL+A V KG +V + DVV +TE LMNEL+KLDA+ A+G
Sbjct: 166 EKAAKAVAAVTAEVDKLAPKVAALDASVRKGEKVAENDVVQVTELLMNELLKLDAVVADG 225
Query: 212 EVKVQRRMQEKRVQKYVESLDAIRAKNAA 240
+VK QRR+Q KRVQKYVE+LDA+ AKNAA
Sbjct: 226 DVKAQRRLQVKRVQKYVETLDAVMAKNAA 254
>Os04g0619900 Ubiquitin domain containing protein
Length = 272
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 135/217 (62%), Gaps = 11/217 (5%)
Query: 38 WEVRPGGMLVQKRSPDGDAPAAPVPT-----------IRVKVKFNGVYHEIYINSQASFG 86
WEVRP GM+VQ R I+V+VK+ HE+ ++S ASFG
Sbjct: 34 WEVRPSGMVVQAREEGPGGGGGGGGGMGIPPRPPPPEIKVRVKYGAARHEVAVSSIASFG 93
Query: 87 ELKKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQR 146
ELKK L+A TGL DQ++ Y+ KER + +LD+ GVK+RSK+ L EDPT+ +R +E++
Sbjct: 94 ELKKLLAARTGLPAADQRLTYRGKERGNADYLDVCGVKNRSKLYLAEDPTSVERRYIERQ 153
Query: 147 RTDKAERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDA 206
++ K E A ++I I+L+VDKLA +V ++E + +G +V + + TL E LM VKLD+
Sbjct: 154 KSAKIETANRAIGAIALEVDKLADQVRSIEKSITRGSKVAEVQITTLIELLMRLAVKLDS 213
Query: 207 IAAEGEVKVQRRMQEKRVQKYVESLDAIRAKNAASHN 243
I AEG+ Q+ +Q KRVQK VE+LD ++ NA N
Sbjct: 214 IHAEGDSSSQKNIQAKRVQKCVETLDVLKISNARLQN 250
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 144/246 (58%), Gaps = 28/246 (11%)
Query: 35 EDEWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSA 94
E EWEVRPGGMLVQ+R DGD P +R++V + ++ + + ++FGELK L+
Sbjct: 16 EGEWEVRPGGMLVQRR--DGDTG----PAVRLRVSHGASFRDVAVPAHSTFGELKGVLTQ 69
Query: 95 PTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQR-----RTD 149
TG+ PE Q++ ++ KE+ FL AGVKD +K++LLE P A +EQR +
Sbjct: 70 ATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKP---APANVEQRAEPVIMDE 126
Query: 150 KAERAAKSISRISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAA 209
+A +++ R+ +VD+L+ KV LE V G ++ D D V LTE LM EL+KLD I A
Sbjct: 127 SMMKACEAVGRVRAEVDRLSAKVCDLEKSVFAGRKIEDKDFVVLTELLMMELLKLDGIEA 186
Query: 210 EGEVKVQRRMQEKRVQKYVESLDAIRAKNA---ASHNKASG---------NGHAKPRAPH 257
EGE + QR+ + +RVQ VE+LD ++A+NA + NK+ NG AP
Sbjct: 187 EGEARAQRKAEVRRVQGLVETLDKLKARNANPFSDQNKSVSVTTQWETFDNGMGSLNAP- 245
Query: 258 LPPPVS 263
PP VS
Sbjct: 246 -PPRVS 250
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 37 EWEVRPGGMLVQKR-----SPDGDAPAAP---VPTIRVKVKFNGVYHEIYINSQASFGEL 88
EWEVRPGGMLVQKR DG + + I V+V +H++ I+S A+FG+L
Sbjct: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
Query: 89 KKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRL 142
K LS TGL P DQ+++YK KERD L M GV+D+ K++LLEDP + ++L
Sbjct: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
>AK058550
Length = 172
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 8/114 (7%)
Query: 37 EWEVRPGGMLVQKR-----SPDGDAPAAP---VPTIRVKVKFNGVYHEIYINSQASFGEL 88
EWEVRPGGMLVQKR DG + + I V+V +H++ I+S A+FG+L
Sbjct: 40 EWEVRPGGMLVQKRRAPEEQDDGSSSMSAHSGADAIVVRVSTGWQWHDVSIDSTATFGDL 99
Query: 89 KKQLSAPTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRL 142
K LS TGL P DQ+++YK KERD L M GV+D+ K++LLEDP + ++L
Sbjct: 100 KVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAVKERKL 153
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 66/101 (65%), Gaps = 5/101 (4%)
Query: 35 EDEWEVRPGGMLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSA 94
E WEVRPGGMLVQKR G V +RV F +H++ I + ++FGELK +LS
Sbjct: 46 EIGWEVRPGGMLVQKREGRG---GEEVILVRVSTGF--AWHDVSIAATSTFGELKVRLSM 100
Query: 95 PTGLHPEDQKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDP 135
TGL P +Q+++++ KER+ L M GV+D+ K++LLEDP
Sbjct: 101 VTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,990,184
Number of extensions: 337749
Number of successful extensions: 1479
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1465
Number of HSP's successfully gapped: 8
Length of query: 334
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 233
Effective length of database: 11,762,187
Effective search space: 2740589571
Effective search space used: 2740589571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)