BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0516700 Os09g0516700|AK072458
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0516700 Protein of unknown function DUF936, plant fami... 841 0.0
Os08g0541500 Protein of unknown function DUF936, plant fami... 560 e-160
Os03g0181800 Protein of unknown function DUF936, plant fami... 180 2e-45
Os01g0108800 Protein of unknown function DUF936, plant fami... 128 9e-30
Os11g0120200 Protein of unknown function DUF936, plant fami... 117 1e-26
Os12g0120000 Protein of unknown function DUF936, plant fami... 117 2e-26
Os07g0588300 Protein of unknown function DUF936, plant fami... 91 2e-18
>Os09g0516700 Protein of unknown function DUF936, plant family protein
Length = 463
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/463 (90%), Positives = 421/463 (90%)
Query: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH
Sbjct: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
Query: 61 ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV 120
ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV
Sbjct: 61 ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV 120
Query: 121 TSSSNFLGNKKAQPTNGLKTTNGLKTTNGLKDTXXXXXXXXXXXXXXINASHKTIGAENK 180
TSSSNFLGNKKAQPTNGLKTTNGLKTTNGLKDT INASHKTIGAENK
Sbjct: 121 TSSSNFLGNKKAQPTNGLKTTNGLKTTNGLKDTSSLSLEKEKGKLGKINASHKTIGAENK 180
Query: 181 KPMLTKSNSSLSKQALNGLGDKKEAIKSKAKPAGTRSTPSSPTSVYSLPASFDRFSNDLK 240
KPMLTKSNSSLSKQALNGLGDKKEAIKSKAKPAGTRSTPSSPTSVYSLPASFDRFSNDLK
Sbjct: 181 KPMLTKSNSSLSKQALNGLGDKKEAIKSKAKPAGTRSTPSSPTSVYSLPASFDRFSNDLK 240
Query: 241 QRNKVKGAEKASSSRLSLLEKAASVLKVTTAGRKXXXXXXXXXXXXXXXPKALRRSWEGK 300
QRNKVKGAEKASSSRLSLLEKAASVLKVTTAGRK PKALRRSWEGK
Sbjct: 241 QRNKVKGAEKASSSRLSLLEKAASVLKVTTAGRKSSAGISSSILSIGSGPKALRRSWEGK 300
Query: 301 VDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKLQNPAKKTTANAP 360
VDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKLQNPAKKTTANAP
Sbjct: 301 VDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKLQNPAKKTTANAP 360
Query: 361 SDDADKAMKKHPPTVKRTSGISNPNVTNLVEVPPNSKKLTDASNSWTTLPPSLAKLGKEL 420
SDDADKAMKKHPPTVKRTSGISNPNVTNLVEVPPNSKKLTDASNSWTTLPPSLAKLGKEL
Sbjct: 361 SDDADKAMKKHPPTVKRTSGISNPNVTNLVEVPPNSKKLTDASNSWTTLPPSLAKLGKEL 420
Query: 421 LKYRESAQMXXXXXXXXXXXXXSLLRCLRYLFSIVAGCVINSS 463
LKYRESAQM SLLRCLRYLFSIVAGCVINSS
Sbjct: 421 LKYRESAQMAAVEAIQEASAAESLLRCLRYLFSIVAGCVINSS 463
>Os08g0541500 Protein of unknown function DUF936, plant family protein
Length = 733
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 306/451 (67%), Positives = 343/451 (76%), Gaps = 17/451 (3%)
Query: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
MASLVPGVL+KLLQHMN+DVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH
Sbjct: 1 MASLVPGVLLKLLQHMNSDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
Query: 61 ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV 120
ATYVSLPE+QHDLILSD IQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVG+PEDLVV
Sbjct: 61 ATYVSLPEEQHDLILSDTIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGSPEDLVV 120
Query: 121 TSSSNFLGNKKAQPTNGLKTTNGLKTTNGLKDTXXXXXXXXXXXXXXINASHKTIGAENK 180
T+S+ FLG+KKAQ ++ NG KD + S K GAE K
Sbjct: 121 TNST-FLGSKKAQ-----------QSINGSKDASTLSLEKEQSKLEKLKPSVKNNGAEIK 168
Query: 181 KPMLTKSNSSLSKQALNGLGDKKEAIKSKAKPAGTRSTPSSPTSVYSLPASFDRFSNDLK 240
KP LTKSNSSLSKQALN + DKKE + SK KP RSTPSSPTSVYSLPASF+RFSND+K
Sbjct: 169 KPQLTKSNSSLSKQALNSIIDKKEVVSSKTKPTSARSTPSSPTSVYSLPASFERFSNDIK 228
Query: 241 QRNKVKGAEKASSSRLSLLEKAASVLKVTTAGRKXXXXX--XXXXXXXXXXPKALRRSWE 298
QR K KGA+K+S SRLSLLEKAASVLK TTAGRK PKALRRSWE
Sbjct: 229 QRTKSKGADKSSPSRLSLLEKAASVLKATTAGRKSSAGNLLSNTMSSIESGPKALRRSWE 288
Query: 299 GKVDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKLQNPAKKTTAN 358
G + K K NSDSK K EKK ENR T + PRRKP V+EK HKDDSK+Q P +K++A+
Sbjct: 289 GNAEAKSKGNSDSKAAKTEKKSENRST--STPRRKPLVEEKPLHKDDSKIQTPPRKSSAS 346
Query: 359 APSDDADKAMKKHPPTVKRTSGI-SNPNVTNLVEVPPNSKKLTDASNSWTTLPPSLAKLG 417
APSDD++K + K ++RTSG+ SN N+TNLV++ NSKKLTDAS SWT+LPPSLAKLG
Sbjct: 347 APSDDSEKIVNKPSSPLRRTSGVSSNTNITNLVKIASNSKKLTDASASWTSLPPSLAKLG 406
Query: 418 KELLKYRESAQMXXXXXXXXXXXXXSLLRCL 448
KELLKYR++AQM +LLRCL
Sbjct: 407 KELLKYRDAAQMAAVEAMQEASAAENLLRCL 437
>Os03g0181800 Protein of unknown function DUF936, plant family protein
Length = 573
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 110/123 (89%)
Query: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGSDLFTNQGFYLKVSDSSH 60
MASL PGVL+K+L+++N+DVKV GE+RS LLQV+SIVPA+ GS+L+ + GF++KVSDSSH
Sbjct: 1 MASLTPGVLLKVLKNINSDVKVCGEYRSILLQVISIVPAITGSELWPDHGFFIKVSDSSH 60
Query: 61 ATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHACVGNPEDLVV 120
+TYVSL ++ ++LILS+K+QLGQFI+V++++++ PVP+L GVRPVPGR+ C+GNP+DL+
Sbjct: 61 STYVSLSKEDNELILSNKLQLGQFIYVEKVQSSIPVPVLVGVRPVPGRNPCIGNPKDLMQ 120
Query: 121 TSS 123
S+
Sbjct: 121 MST 123
>Os01g0108800 Protein of unknown function DUF936, plant family protein
Length = 231
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 85/120 (70%), Gaps = 4/120 (3%)
Query: 1 MASLVPGVLVKLLQHMNTDV-KVAGEHRSSLLQVVSIVPA-LAGSDLFTNQG-FYLKVSD 57
M++L GVL+KLL M K GEHR++LLQV IVPA L DL G FY+KVSD
Sbjct: 1 MSTLSAGVLLKLLDGMKAGAAKPVGEHRTALLQVTDIVPADLDDKDLLPRHGKFYVKVSD 60
Query: 58 SSHATYVSLPEDQHDLILSDKIQLGQFIHVDRLEAATPVPILRGVRPVPGRHA-CVGNPE 116
SSH+ Y +LP Q DL+LS+K+QLGQF+H+DRL+ +PVP++ G RP+PGRH VG P+
Sbjct: 61 SSHSIYATLPLPQADLVLSNKLQLGQFVHLDRLDPGSPVPVIVGARPLPGRHPLVVGTPD 120
>Os11g0120200 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 83/125 (66%), Gaps = 6/125 (4%)
Query: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGS---DLFTNQGFYLKVSD 57
MA++ PGVL+KLLQ M+TD +VAG+HRS +LQV ++VPAL S L+ + GF L++SD
Sbjct: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
Query: 58 SSHATYVSLPEDQHDLILSDKIQL-GQFIHVDRLEAATPVPILRGVRPVPGRHAC--VGN 114
H+TYV D ++S + QL G +H+DRL A PVP G+RPVP + VGN
Sbjct: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIRPVPSSRSVSFVGN 120
Query: 115 PEDLV 119
PE LV
Sbjct: 121 PEPLV 125
>Os12g0120000 Protein of unknown function DUF936, plant family protein
Length = 708
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 83/125 (66%), Gaps = 6/125 (4%)
Query: 1 MASLVPGVLVKLLQHMNTDVKVAGEHRSSLLQVVSIVPALAGS---DLFTNQGFYLKVSD 57
MA++ PGVL+KLLQ M+TD +VAG+HRS +LQV ++VPAL S L+ + GF L++SD
Sbjct: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
Query: 58 SSHATYVSLPEDQHDLILSDKIQL-GQFIHVDRLEAATPVPILRGVRPVPGRHAC--VGN 114
H+TYV D ++S + QL G +H+DRL A PVP G+RPVP + VGN
Sbjct: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIRPVPSSRSVSFVGN 120
Query: 115 PEDLV 119
PE LV
Sbjct: 121 PEPLV 125
>Os07g0588300 Protein of unknown function DUF936, plant family protein
Length = 640
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 30 LLQVVSIVPALAGSDLFT-NQGFYLKVSDSSHATYVSLPEDQHDLILSDKIQLGQFIHVD 88
LLQV +I PAL+G++ F+ + GFYL++SDS+ + YVSL D DLIL++ + +GQ I V+
Sbjct: 58 LLQVTNITPALSGANPFSGHHGFYLRLSDSARSCYVSLHADHDDLILTNGLHIGQVIEVE 117
Query: 89 RLEAATPVPILRGVRPVPGRHACV 112
L + P P+LR R +PGR+ C+
Sbjct: 118 HLVPSVPAPVLRHFRVLPGRYPCI 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,333,863
Number of extensions: 589540
Number of successful extensions: 1687
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 7
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 158 (65.5 bits)