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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0120000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF936, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.0475) R2 : 0.521
β1 : -1.5 (0.183) R2dD : 0.0859 R2D : 0.0198
β2 : 2.07 (0.122) R2dC : 0.304 R2C : 0.335
β3 : 2.06 (0.198) R2dE : 0.145 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.107) R2dN8 : 0.00275 R2N8 : 0.0173
σ : 0.873
deviance : 351.44
__
_____
C
peak time of C : 5.79
E
wheather : temperature
threshold : 16
memory length : 1374
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.99 0.865 4.59 -2.6 2.1 1.81 -0.79 -3.92 -0.164 5.76 20.79 1421 -- --
350.96 0.873 4.49 -1.46 2.11 1.77 -0.82 -- 0.158 5.79 18.8 1400 -- --
340.41 0.859 4.59 -2.69 2.1 1.8 -- -4.19 -0.183 5.76 21.1 1418 -- --
351.44 0.873 4.46 -1.5 2.07 2.06 -- -- 0.135 5.79 16 1374 -- --
562.05 1.1 4.62 -2.56 -- 2.06 -- -3.89 -0.143 -- 21.03 1319 -- --
433.34 0.976 4.36 -0.827 2.18 -- -0.762 -- 0.543 5.59 -- -- -- --
434.76 0.976 4.36 -0.831 2.17 -- -- -- 0.547 5.58 -- -- -- --
569.25 1.11 4.5 -1.55 -- 2.55 -- -- 0.135 -- 14.33 1305 -- --
404.62 0.937 4.39 -- 2.07 1.59 -- -- 0.408 5.82 12.52 1306 -- --
680.22 1.22 4.39 -0.76 -- -- -- -- 0.599 -- -- -- -- --
452.96 0.996 4.34 -- 2.16 -- -- -- 0.639 5.6 -- -- -- --
621.44 1.16 4.43 -- -- 1.44 -- -- 0.407 -- 20.77 1305 -- --
695.46 1.23 4.37 -- -- -- -- -- 0.683 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.62 humidity 90 43200 > th dose independent rect. 22 1
2 330.02 temperature 10 720 > th dose dependent rect. 17 16
4 330.81 temperature 20 1440 > th dose dependent rect. 18 4
11 331.24 temperature 20 1440 > th dose dependent rect. 20 1
18 331.86 humidity 90 43200 > th dose dependent rect. 22 1
29 332.70 humidity 90 43200 < th dose independent rect. 22 1
48 334.15 temperature 20 1440 > th dose dependent rect. 15 16
51 334.23 temperature 30 720 < th dose dependent rect. 17 16
52 334.25 temperature 20 1440 > th dose dependent sin 14 NA
90 334.93 temperature 15 720 > th dose dependent sin 11 NA
125 335.80 humidity 90 43200 > th dose dependent rect. 18 6
130 335.93 temperature 10 720 > th dose dependent rect. 18 18
147 336.47 temperature 30 720 < th dose dependent sin 11 NA
167 336.82 humidity 90 43200 > th dose dependent rect. 5 2
172 336.89 wind 7 43200 > th dose dependent rect. 9 12
178 336.99 temperature 10 1440 > th dose dependent rect. 17 5
187 337.10 wind 7 43200 > th dose dependent sin 21 NA
217 337.50 temperature 30 1440 < th dose dependent rect. 17 5
222 337.65 radiation 1 43200 > th dose independent rect. 18 1
236 337.74 humidity 90 43200 > th dose dependent rect. 4 21
238 337.80 humidity 90 43200 < th dose independent rect. 18 5
256 338.05 temperature 30 1440 < th dose dependent rect. 18 1
259 338.07 wind 7 43200 > th dose dependent rect. 5 16
281 338.30 wind 7 43200 > th dose dependent rect. 9 16
296 338.46 wind 7 43200 > th dose dependent rect. 9 18
297 338.47 temperature 10 1440 > th dose dependent rect. 20 1
388 339.20 wind 7 43200 > th dose dependent rect. 13 20
390 339.21 temperature 30 1440 < th dose dependent rect. 20 1
395 339.23 wind 7 43200 > th dose dependent rect. 11 22
396 339.24 wind 7 43200 > th dose dependent rect. 9 7
406 339.31 wind 7 43200 > th dose dependent rect. 24 21
410 339.34 humidity 90 43200 > th dose independent rect. 3 21
415 339.37 wind 7 43200 < th dose independent rect. 5 16
433 339.49 wind 7 43200 > th dose independent rect. 5 16
439 339.54 humidity 90 43200 > th dose dependent rect. 11 14
469 339.76 wind 7 43200 > th dose independent rect. 23 22
486 339.86 wind 9 43200 > th dose independent rect. 13 19
490 339.88 wind 7 43200 > th dose independent rect. 2 19
505 339.92 wind 9 43200 < th dose independent rect. 8 13
507 339.94 wind 7 43200 < th dose independent rect. 23 22
516 339.96 temperature 20 1440 > th dose dependent rect. 16 23
520 339.99 wind 7 43200 < th dose independent rect. 2 19
526 340.03 temperature 20 1440 > th dose dependent no NA NA
531 340.07 temperature 20 1440 > th dose dependent rect. 1 23
574 340.19 wind 3 43200 > th dose dependent rect. 20 1
577 340.21 temperature 25 4320 < th dose independent rect. 6 6
582 340.22 wind 9 43200 > th dose independent rect. 8 13
583 340.22 wind 7 43200 < th dose independent rect. 5 20
586 340.23 wind 5 43200 > th dose dependent rect. 13 12
604 340.28 wind 5 43200 > th dose dependent rect. 13 14
608 340.30 temperature 25 4320 > th dose independent rect. 5 7
622 340.33 wind 7 43200 > th dose independent rect. 5 20
626 340.33 temperature 20 1440 > th dose dependent rect. 6 23
628 340.34 wind 7 43200 < th dose independent rect. 5 22
633 340.35 wind 9 43200 < th dose independent rect. 13 20
641 340.37 wind 7 43200 > th dose independent rect. 5 22
661 340.43 humidity 90 43200 > th dose dependent sin 18 NA
673 340.46 humidity 90 43200 > th dose dependent rect. 16 21
699 340.55 temperature 20 1440 > th dose dependent rect. 20 23
718 340.59 humidity 90 43200 > th dose dependent sin 3 NA
746 340.66 wind 7 43200 > th dose independent rect. 13 23
752 340.67 wind 9 43200 > th dose independent rect. 9 18
753 340.67 humidity 90 43200 > th dose dependent rect. 3 16
771 340.71 wind 7 43200 > th dose independent rect. 13 21
810 340.79 humidity 90 43200 > th dose dependent no NA NA
840 340.85 wind 9 43200 > th dose independent rect. 9 16
854 340.87 wind 7 43200 < th dose independent rect. 13 23
856 340.87 temperature 20 1440 > th dose dependent rect. 4 4
914 340.97 humidity 90 43200 > th dose dependent rect. 9 23
917 340.98 temperature 25 1440 > th dose dependent rect. 12 3
928 340.99 humidity 90 43200 > th dose dependent rect. 11 23
996 341.12 humidity 90 43200 > th dose independent rect. 12 12