BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0120000 Os12g0120000|AK105399
(708 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674 407 e-113
AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749 101 1e-21
AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506 99 6e-21
AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511 80 4e-15
AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519 79 7e-15
AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641 79 7e-15
AT2G31920.1 | chr2:13574053-13576367 REVERSE LENGTH=586 69 1e-11
>AT4G13370.1 | chr4:7777916-7780334 REVERSE LENGTH=674
Length = 673
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 285/723 (39%), Positives = 372/723 (51%), Gaps = 71/723 (9%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
MA++ PG+LLKLLQ M++ R GDHRS +LQVT +VPAL S LWP+ GF +Q+SD
Sbjct: 1 MASLAPGILLKLLQCMNSGTRPTGDHRSAILQVTGIVPALAGS---DLWPNQGFYVQISD 57
Query: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIXXXXXXXXXXFVGN 120
L+STYV S D D ++S R QL G ++L+RL FA PVPRA GI FVG
Sbjct: 58 SLNSTYVSLSERDTDLILSNRLQL-GQFIYLERLEFATPVPRAAGIRPVAGRHA--FVGK 114
Query: 121 PEPLVARPAACS-RGYVIQPGSHSDAA-PPLMPSSSGNAAQSDATNAIN---RTVLAHKN 175
PEPL+AR + S R +VIQP S S+ + P+ + D + + R LA N
Sbjct: 115 PEPLIARVSNGSKRDFVIQPVSDSEYSLDPIAVYLNNRRIDDDGDSDVKPNVRQALAPVN 174
Query: 176 XXXXXXXXXXXXXKR----RFSSPAPSKQRDPSPSVKGGASRPSSPSVKGASRASSPAVR 231
+ RFSSPA SK+ SV G S R SP V
Sbjct: 175 QNEENRNQIRNQKPKTTPQRFSSPASSKR-----SVSSGKKNCSGAVAVTVERDPSPVVS 229
Query: 232 GTPR-ATSPAPSKCVVPSLVAAKEENRRTAREPAIIVPSRYRQ-----XXXXXXXXXXXX 285
G R + SP PSKCVVPSL AA+EENR+ AREP+I+VPSRYRQ
Sbjct: 230 GKGRRSASPVPSKCVVPSLAAAREENRKVAREPSIVVPSRYRQPSPNGRKMNPSPSGRRM 289
Query: 286 XXXXXXXXXXXXXXXXXXXXXXXKKKVGVLVAGISKMTDLTNGSAVKPG-RKSWDNTSIA 344
KKK+ V+ AGISK+++ GS+ K G RK+W+
Sbjct: 290 SISPGRRLSSGLKMTPMVGDSSGKKKMAVIAAGISKVSEALVGSSAKNGNRKNWEEP--L 347
Query: 345 AAAGXXXXXXXXXXXXTILRTQEAMARRLSDVTTELSSNDDDSSVDEKPKPRKKIESPAV 404
A G ILRTQ AM RRLSD S S +EK K S
Sbjct: 348 AGDGSAKNKPDHQ---AILRTQAAMTRRLSDANRR-KSGSSSSVCEEKAKSCSSESSLLE 403
Query: 405 KTKAM-APKIMLHDPKWTDGSIPLDGVSDVLSKMGKEXXXXXXXXXXXXXXXXXXXXXXE 463
+ A I H+ KWTDGS+PLD +SD L+K+GKE E
Sbjct: 404 EVSAFEGLGITYHERKWTDGSVPLDSISDELAKLGKEAMKRRDFAAKAAARALEEANANE 463
Query: 464 SVIRNLSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETASWENSVT 523
+IR LSKFSEL+SASK NPL ++ FL +YED +K+ KIA S + ++ +N ++
Sbjct: 464 CIIRCLSKFSELSSASKVGNPLRIINEFLKIYEDVMKYSKIASENSF--SLSSDQQNPIS 521
Query: 524 HWVEAALATDLEVLKLM--NKAPESLSRKRGADKPKAPLVVEAPRTTISKRQSHGTSAKV 581
WVEAALAT+LEV+ L+ +++P SL K P T +S R S T V
Sbjct: 522 LWVEAALATNLEVVSLVKSHESPSSL-------KKSMP-------TRLSPRPSSKTDNIV 567
Query: 582 QSKVLPTSSASCAWNKTQGVNETAELATTLCCEMHTWFLKFVDEAMDLGFHLFEDQNVAS 641
W G+ ETA+ A L EM WF++FV+E++D ++N A
Sbjct: 568 -----------GMWTDLDGLKETAKFAVNLQSEMQVWFIEFVEESLD-------NKNAAK 609
Query: 642 RGKQSSHITMVLSQFKKISDWLDGVGKIAE-EATTKDKVEQLKCKIYGFVINHMGSAFDS 700
R S I VLSQ K++++WLD V E + TT DK+E+LK KIYGFVI+H+GS +D+
Sbjct: 610 RSLDGSSIAAVLSQLKQVNEWLDRVSSNQENKITTMDKIERLKRKIYGFVIHHVGSTYDN 669
Query: 701 SVS 703
S S
Sbjct: 670 SAS 672
>AT1G08760.1 | chr1:2805478-2808409 FORWARD LENGTH=749
Length = 748
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
MA + PGVLLKLLQ M+TD ++AG+HRS +LQV ++VPAL L+P+ GF L++SD
Sbjct: 1 MANLVPGVLLKLLQHMNTDVKIAGEHRSSLLQVISIVPALAGG---ELFPNQGFYLKVSD 57
Query: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIXXXXXXXXXXFVGN 120
H+TYV D ++S + QL G +H+DR+ + PVP G+ VG+
Sbjct: 58 SSHATYVSLPDEHDDLILSDKIQL-GQYIHVDRVESSSPVPILRGV--RPVPGRHPCVGD 114
Query: 121 PEPLVA 126
PE +VA
Sbjct: 115 PEDIVA 120
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 131/306 (42%), Gaps = 54/306 (17%)
Query: 434 LSKMGKEXXXXXXXXXXXXXXXXXXXXXXESVIRNLSKFSELTSASKTSNPLPTVDIFLA 493
LS+MG+E ES+++ L +S+L S +K +PLP V+ FL
Sbjct: 424 LSRMGQEVLRHREAAQVVAIEALQEASASESLLQCLIMYSDLLSTAKEDDPLPVVEQFLK 483
Query: 494 VYEDTLKWKKIAESIST------------NRTETA-----SWENSVTHWVEAALATDLEV 536
++ + I ES+S NR+E A + WV+AAL T+L
Sbjct: 484 LHSGLKNVQVITESLSKLLSLMSSPDNEENRSEEAIKAASEKQKLAASWVQAALVTNLSP 543
Query: 537 LKLMNKAPESLSRKRGADKPKAPLVVEAP------------------------RTTISKR 572
+ + S K A + K +++E+P + I K
Sbjct: 544 FSVYS----SKQAKLAASRSKPVIILESPGNNSSSKTRGNIQNKPTIGSKLVAQGMIRKH 599
Query: 573 QSHGTSAKVQSKVLPTSSASCAWNKTQGVNETAELATTLCCEMHTWFLKFVDEAMDLGFH 632
+ + +S K S V + S W K G+NE +LA L WFL FV+ +D
Sbjct: 600 RENSSSQKATS-VAGSESPPLNWVKGNGLNEATDLAEKLQMVSQDWFLGFVERFLDADVI 658
Query: 633 LFEDQNVASRGKQSSHITMVLSQFKKISDWLDGVGKIAEE----ATTKDKVEQLKCKIYG 688
+++ G+ I +LSQ K ++DWLD +G +E +K+ +++L+ KIY
Sbjct: 659 TSSSLSLSDNGQ----IAGMLSQLKSVNDWLDEIGSKEDEEGLQEVSKETIDRLRKKIYE 714
Query: 689 FVINHM 694
+++ H+
Sbjct: 715 YLLTHV 720
>AT3G14170.1 | chr3:4696115-4697989 REVERSE LENGTH=506
Length = 505
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
MA++TP VL+KLL+ M+T+ +V G++RS +LQV ++VPAL S LWP+ GF +++SD
Sbjct: 1 MASLTPRVLIKLLETMNTNIKVRGEYRSVLLQVISIVPALAGS---ELWPNQGFFIKVSD 57
Query: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIXXXXXXXXXXFVGN 120
HSTYV S+ D + +++ + +G ++D+L PVP VG+ FVGN
Sbjct: 58 SSHSTYVSLSNEDNELILNNKLG-IGQFFYVDKLDAGTPVPVLVGV--RPISGRHPFVGN 114
Query: 121 PEPLV 125
P+ L+
Sbjct: 115 PKDLM 119
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 588 TSSASCAWNKTQGVNETAELATTLCCEMHTWFLKFVDEAMDLGFH-LFEDQNVASRGKQ- 645
T + W K G E EL TL E +WFLKF+++A+D G H ++ ++G +
Sbjct: 383 TEAEKLEWVKGNGTEEIKELTNTLKRETRSWFLKFLEDALDTGLHATVPEKKGKTKGARL 442
Query: 646 ---SSHITMVLSQFKKISDWLDGV--GKIAEEATTKDKVEQLKCKIYGFVINHMGSA 697
+HI LSQ K+ ++WL+ V ++ + + + +E+LK KIY ++ ++ SA
Sbjct: 443 AEPDNHIAETLSQLKQANEWLEKVKNDNLSSDNSLLENIERLKKKIYSCLLLYVDSA 499
>AT1G70340.1 | chr1:26504567-26506389 REVERSE LENGTH=511
Length = 510
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 5/125 (4%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
MA + PG+L KL+Q M T + +HRS +LQVT +VP SL P GFL+++SD
Sbjct: 1 MAALAPGILQKLIQGMKTGIKPTREHRSSMLQVTDIVP--IDLDEKSLEPKQGFLIKISD 58
Query: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIXXXXXXXXXXFVGN 120
HS YV S D ++S + QL G +++DRL PVP G +G
Sbjct: 59 SSHSIYVSLPSDQDDVVLSNKLQL-GQFIYVDRLEPGSPVPVIKG--AKPIPGRHPLLGT 115
Query: 121 PEPLV 125
PE LV
Sbjct: 116 PETLV 120
>AT1G23790.1 | chr1:8410099-8411917 FORWARD LENGTH=519
Length = 518
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSD 60
MA + PG+L KL+ M T + G+HRS +LQVT +VP +L P GF +++SD
Sbjct: 1 MAALAPGILQKLIDGMKTGVKPTGEHRSSLLQVTDIVP--IDLDEKNLLPKQGFFIKVSD 58
Query: 61 GLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGIXXXXXXXXXXFVGN 120
HS YV S D ++S + QL G +++DRL PVP G +G
Sbjct: 59 SSHSIYVSLPSDQDDDVLSNKMQL-GQFIYVDRLDPGTPVPIIKG--ARPIPGRHPLLGT 115
Query: 121 PEPLVA 126
PEPL++
Sbjct: 116 PEPLMS 121
>AT3G19610.1 | chr3:6812493-6814660 REVERSE LENGTH=641
Length = 640
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 5/107 (4%)
Query: 1 MATVTPGVLLKLLQAMHTDD-RVAGDHRSPVLQVTAVVPALTASTADSLWPSNGFLLQLS 59
MA + GVL KLL+ M R DHR +LQ+ ++P L A LWP+ GF L+++
Sbjct: 29 MAELRSGVLFKLLEEMGVGKVRRDVDHRPVLLQIRCIIPVLAAG---GLWPNKGFFLRIT 85
Query: 60 DGLHSTYVQPSSADADALVSARPQLVGHLVHLDRLRFARPVPRAVGI 106
D HS YV + D ++ + Q +G L+ +++L FA PVP GI
Sbjct: 86 DSTHSIYVSLPREENDLVLYDKLQ-IGQLIFVEKLEFAYPVPMIKGI 131
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 37/261 (14%)
Query: 420 WTDGSIPLDGVSDVLSKMGKEXXXXXXXXXXXXXXXXXXXXXXESVIRNLSKFSELTSA- 478
WT+ I D + + +GKE E +++ L +SEL+
Sbjct: 334 WTETEILWDSLPPKVVNLGKEILRQRDTAIRAASQALLEASAAERLLKCLRSYSELSDRR 393
Query: 479 -SKTSNPLPTVDIFLAVYEDTLKWKKIAESISTNRTETAS---------WENSVTHWVEA 528
N P + FL+ ++ K + I +S+ST +TE + T W+++
Sbjct: 394 NQHQENQQPPIQDFLSFQDELSKSRLIIQSLSTEKTEHCNANIVKTGDERREKATQWIKS 453
Query: 529 ALATDLEVLKLMNKAPESLSRKRGADKPKAPLVVEAPRTTISKRQSHGTSAKVQSKVLPT 588
ALATDL+++ L P ++G + E+ + +S+ +++ ++
Sbjct: 454 ALATDLKLVSLSASKPTQSPGRKGL----TLIAQESDNREGNASESNSRLGEIKERLSRA 509
Query: 589 SSASCAWNKTQGVNETAELATTLCCEMHTWFLKFVDEAMDLGFHLFEDQN-VASRGKQSS 647
SS W K +G +W+L V++ +D E N R +S
Sbjct: 510 SSELRNWLKEEG---------------RSWYLNRVEKYLD------EISNGTKWREMRSE 548
Query: 648 HITMVLSQFKKISDWLDGVGK 668
+ + Q K++SDWLD + K
Sbjct: 549 EVGETMYQIKRVSDWLDTIVK 569
>AT2G31920.1 | chr2:13574053-13576367 REVERSE LENGTH=586
Length = 585
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 128/327 (39%), Gaps = 24/327 (7%)
Query: 388 SVDEKPKPRKKIESPAVKTKAMAPKIMLHDPKWTDGSIPLDGVSDVLSKMGKEXXXXXXX 447
SV PK K S AV K+ W+D + G+ + +GKE
Sbjct: 265 SVTRSPKDGIKSLSKAVTPPVALFKVPSSHMTWSDQRMSWSGLPKTIQLLGKEVSSHRQV 324
Query: 448 XXXXXXXXXXXXXXXESVIRNLSKFSELTSASKTSNPLPTVDIFLAVYEDTLKWKKIAES 507
ESV+ +L F+EL ++K + V FL +Y +T K
Sbjct: 325 AVSAAVSALEEASAMESVLFSLQAFAELCDSTKKLSTGQVVARFLDIYHNTQNTCKAVHR 384
Query: 508 ISTNRTETASW----ENSVTHWVEAALATDLEVLKLMNKAPESLSRKRGADKPKAPLVVE 563
+ T S + T WV+AA+ T L K P K+G +V++
Sbjct: 385 LLTQNRNNGSCRLVVNKNATSWVQAAVVTGFSQFNLF-KEPG----KKGDAADHHYIVMQ 439
Query: 564 ------APRTTISKRQSHGTSAKVQSKVLPTSSASCAWNKTQGVNETAELATTLCCEMHT 617
P+ T S R AK + + S + + ++ LA L
Sbjct: 440 NSSEKLNPKETTSSRTPSYKGAKPPATKHCSVSDRSSLEGKSSLKDSTSLADELVQVSSQ 499
Query: 618 WFLKFVDEAMDLGFHLFEDQNVASRGKQSSHITMVLSQFKKISDWLDGVGKIAEEATTKD 677
WFLK+++ +++ G L + + + GK+S +L K ++ WLD + T +
Sbjct: 500 WFLKYLENSLNKGSFLVKTEE--TNGKES-----LLVHLKALNHWLDDLN--LNRTETNE 550
Query: 678 KVEQLKCKIYGFVINHMGSAFDSSVSI 704
KVE L+ K+ F++ H+ S + ++
Sbjct: 551 KVEDLRKKLQRFLLEHIESVIGDTYNM 577
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 1 MATVTPGVLLKLLQAMHTDDRVAGD----HRSPVLQVTAVVPALTASTADSLWPSNGFLL 56
MA++TPGVL LL + + HRSP+LQV +VP L+ D W S F +
Sbjct: 1 MASLTPGVLSNLLNIAAGNSPSSPPLLSSHRSPLLQVIEIVPCLS----DDQWRSEAFFV 56
Query: 57 QLSDGLHSTYVQPSSADADALVSARPQLVGHLVHLD---RLRFARPVPRAVGIXXXXXXX 113
++SD LH+ YV S+ D L+ + +G +++ + PVP G+
Sbjct: 57 KVSDSLHAAYVAVSTGDDADLIRSDEIQLGQFIYICGGLHVEKGCPVPVIRGLKPVPKRR 116
Query: 114 XXXFVGNPEPLVA 126
VGNP L +
Sbjct: 117 MC--VGNPSDLYS 127
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.125 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,926,424
Number of extensions: 486026
Number of successful extensions: 1777
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 12
Length of query: 708
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 602
Effective length of database: 8,200,473
Effective search space: 4936684746
Effective search space used: 4936684746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 115 (48.9 bits)