Os09g0516700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF936, plant family protein.
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Os09g0516700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF936, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.47 | 0.306 | 12.3 | 0.096 | 0.921 | -0.765 | 1.51 | 0.475 | 0.244 | 4.76 | 2.653 | 1410 | -- | -- |
| 42.71 | 0.304 | 12.3 | 0.119 | 0.91 | -0.848 | 1.51 | -- | 0.244 | 4.86 | 2.453 | 1403 | -- | -- |
| 48.32 | 0.324 | 12.3 | 0.107 | 0.932 | -0.758 | -- | 0.421 | 0.239 | 4.51 | 2.57 | 1433 | -- | -- |
| 48.44 | 0.324 | 12.3 | 0.14 | 0.93 | -0.836 | -- | -- | 0.247 | 4.63 | 2.293 | 1421 | -- | -- |
| 93.9 | 0.451 | 12.3 | 0.113 | -- | -0.857 | -- | 0.58 | 0.23 | -- | 3.1 | 1397 | -- | -- |
| 51.26 | 0.336 | 12.2 | 0.323 | 0.944 | -- | 1.53 | -- | 0.377 | 4.54 | -- | -- | -- | -- |
| 57.54 | 0.355 | 12.2 | 0.312 | 0.953 | -- | -- | -- | 0.369 | 4.48 | -- | -- | -- | -- |
| 93.59 | 0.451 | 12.3 | 0.167 | -- | -0.933 | -- | -- | 0.253 | -- | 2.802 | 1399 | -- | -- |
| 48.83 | 0.325 | 12.3 | -- | 0.938 | -0.927 | -- | -- | 0.245 | 4.46 | 1.84 | 1437 | -- | -- |
| 106.14 | 0.481 | 12.3 | 0.349 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 60.1 | 0.363 | 12.3 | -- | 0.959 | -- | -- | -- | 0.334 | 4.48 | -- | -- | -- | -- |
| 94.26 | 0.452 | 12.3 | -- | -- | -0.992 | -- | -- | 0.239 | -- | 2.627 | 1399 | -- | -- |
| 109.35 | 0.488 | 12.3 | -- | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.43 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 3 | 42.44 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 9 | 42.51 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 10 | 42.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 11 | 42.53 | radiation | 1.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 12 | 42.54 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 23 | 42.67 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 34 | 42.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 37 | 42.70 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 41 | 42.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 51 | 42.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 79 | 42.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 90 | 42.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 93 | 42.84 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 95 | 42.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 103 | 42.90 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 130 | 42.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 182 | 42.91 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 183 | 42.91 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 198 | 42.91 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 226 | 42.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 228 | 42.93 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 229 | 42.93 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 234 | 42.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 242 | 42.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 277 | 42.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 290 | 42.99 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 332 | 43.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 340 | 43.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 385 | 43.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 392 | 43.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 399 | 43.17 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 416 | 43.20 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 433 | 43.22 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 453 | 43.24 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 504 | 43.31 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 505 | 43.31 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 516 | 43.33 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 519 | 43.33 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 530 | 43.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 567 | 43.36 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 662 | 43.45 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 702 | 43.51 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 717 | 43.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 723 | 43.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 725 | 43.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 728 | 43.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 807 | 43.65 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 810 | 43.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 832 | 43.69 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 851 | 43.72 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 852 | 43.72 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 966 | 43.81 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 4 | NA |