BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0483200 Os09g0483200|Os09g0483200
(139 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0483200 Ribosomal protein L40e family protein 252 5e-68
Os09g0483400 Ubiquitin 212 8e-56
Os09g0452700 Ubiquitin 210 3e-55
Os07g0489500 Similar to Ubiquitin 209 6e-55
Os03g0234200 Ubiquitin 201 2e-52
Os03g0259500 Ribosomal protein L40e family protein 194 2e-50
AK064604 191 1e-49
Os06g0681400 Polyubiquitin 135 1e-32
Os02g0161900 Polyubiquitin 135 1e-32
Os05g0504766 Similar to Polyubiquitin protein (Fragment) 135 1e-32
Os08g0187000 135 1e-32
Os04g0628100 Similar to Polyubiquitin 134 2e-32
AK067024 134 2e-32
Os06g0650100 Similar to Polyubiquitin gene (Fragment) 134 2e-32
Os09g0420800 Similar to Ubiquitin 134 2e-32
Os01g0328400 Ubiquitin 134 2e-32
AK059242 134 2e-32
Os05g0160200 Ubiquitin 134 2e-32
Os06g0673500 Similar to Ubiquitin 133 4e-32
AK108207 132 1e-31
Os01g0641200 Ubiquitin domain containing protein 131 1e-31
Os01g0641400 114 2e-26
AF216530 113 5e-26
Os05g0457400 Similar to Ubiquitin 107 3e-24
Os05g0242133 Ubiquitin domain containing protein 105 9e-24
Os10g0491801 91 4e-19
Os08g0185900 Ubiquitin domain containing protein 90 6e-19
Os07g0492200 88 2e-18
Os10g0491500 78 3e-15
D21312 75 2e-14
>Os09g0483200 Ribosomal protein L40e family protein
Length = 139
Score = 252 bits (644), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 125/139 (89%), Positives = 125/139 (89%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST YTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
Query: 121 CGHTNQIRPKKRFISKTAN 139
CGHTNQIRPKKRFISKTAN
Sbjct: 121 CGHTNQIRPKKRFISKTAN 139
>Os09g0483400 Ubiquitin
Length = 140
Score = 212 bits (539), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 104/135 (77%), Positives = 113/135 (83%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL+DGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST YTIQEP+L LALKY EKK VCRKCYARLP RS +CRKKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYTIQEPTLRALALKYREKKKVCRKCYARLPIRSHHCRKKK 120
Query: 121 CGHTNQIRPKKRFIS 135
CGH+ ++R KK+FI+
Sbjct: 121 CGHSKELRLKKKFIN 135
>Os09g0452700 Ubiquitin
Length = 140
Score = 210 bits (534), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/139 (76%), Positives = 114/139 (82%), Gaps = 1/139 (0%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQ-EPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKK 119
IQKEST Y EP+L LA KYNE K+VCR+CYARLP RSTNCRKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
Query: 120 KCGHTNQIRPKKRFISKTA 138
KCGH+N+IR KKRF+SK +
Sbjct: 121 KCGHSNEIRAKKRFMSKLS 139
>Os07g0489500 Similar to Ubiquitin
Length = 135
Score = 209 bits (532), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/135 (75%), Positives = 112/135 (82%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST Y + EP+LL LA EKKM+CRKCYARLP ++TNCRKKK
Sbjct: 61 IQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKK 120
Query: 121 CGHTNQIRPKKRFIS 135
CGHTN++RPKK+ +S
Sbjct: 121 CGHTNELRPKKKLVS 135
>Os03g0234200 Ubiquitin
Length = 129
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/133 (75%), Positives = 108/133 (81%), Gaps = 6/133 (4%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST I EPSL LA KYN+ KM+CRKCYARL R+ NCRKKK
Sbjct: 61 IQKESTLHLVLRLRG------GIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKK 114
Query: 121 CGHTNQIRPKKRF 133
CGH+NQ+RPKK+
Sbjct: 115 CGHSNQLRPKKKI 127
>Os03g0259500 Ribosomal protein L40e family protein
Length = 136
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/131 (74%), Positives = 106/131 (80%), Gaps = 4/131 (3%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVE+SD + NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST + EPSL +LA K+N KMVCRKCYA LP R+TNCRKKK
Sbjct: 61 IQKEST----LHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNCRKKK 116
Query: 121 CGHTNQIRPKK 131
CGH+NQ+RPKK
Sbjct: 117 CGHSNQLRPKK 127
>AK064604
Length = 128
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/133 (73%), Positives = 105/133 (78%), Gaps = 6/133 (4%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK 120
IQKEST I EPSL LA KYN KM+CRKCYARL R+ NCRKKK
Sbjct: 61 IQKESTLHLVLRLRG------GIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKK 114
Query: 121 CGHTNQIRPKKRF 133
CGHTN +RPKK+
Sbjct: 115 CGHTNNLRPKKKV 127
>Os06g0681400 Polyubiquitin
Length = 457
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
Query: 61 IQKEST 66
IQKEST
Sbjct: 441 IQKEST 446
>Os02g0161900 Polyubiquitin
Length = 457
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
Query: 61 IQKEST 66
IQKEST
Sbjct: 441 IQKEST 446
>Os05g0504766 Similar to Polyubiquitin protein (Fragment)
Length = 381
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
>Os08g0187000
Length = 203
Score = 135 bits (339), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 114 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 173
Query: 61 IQKEST 66
IQKEST
Sbjct: 174 IQKEST 179
>Os04g0628100 Similar to Polyubiquitin
Length = 392
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 88 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 147
Query: 61 IQKEST 66
IQKEST
Sbjct: 148 IQKEST 153
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 164 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 223
Query: 61 IQKEST 66
IQKEST
Sbjct: 224 IQKEST 229
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 240 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 299
Query: 61 IQKEST 66
IQKEST
Sbjct: 300 IQKEST 305
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 316 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 375
Query: 61 IQKEST 66
IQKEST
Sbjct: 376 IQKEST 381
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 65/66 (98%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVE SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 12 MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 71
Query: 61 IQKEST 66
IQKEST
Sbjct: 72 IQKEST 77
>AK067024
Length = 305
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/65 (98%), Positives = 65/65 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKES 65
IQKES
Sbjct: 289 IQKES 293
>Os06g0650100 Similar to Polyubiquitin gene (Fragment)
Length = 177
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 84
Query: 61 IQKEST 66
IQKEST
Sbjct: 85 IQKEST 90
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 3 IFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+
Sbjct: 103 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 162
Query: 63 KEST 66
S
Sbjct: 163 GGSV 166
>Os09g0420800 Similar to Ubiquitin
Length = 153
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 3 IFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 138
Query: 63 KEST 66
S
Sbjct: 139 GGSV 142
>Os01g0328400 Ubiquitin
Length = 155
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>AK059242
Length = 155
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os05g0160200 Ubiquitin
Length = 155
Score = 134 bits (337), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os06g0673500 Similar to Ubiquitin
Length = 187
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 62/66 (93%), Positives = 63/66 (95%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITL VESSD IDNVKAKIQDKEGIPPDQQRLIFA KQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRLIFADKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
>AK108207
Length = 159
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os01g0641200 Ubiquitin domain containing protein
Length = 154
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 65/66 (98%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
+ + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T DY
Sbjct: 77 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYK 136
Query: 61 IQKEST 66
I+ S
Sbjct: 137 IEAGSV 142
>Os01g0641400
Length = 152
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/66 (78%), Positives = 61/66 (92%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTL G++ITL V+S D+++NVKA+I D+EG+PP QQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>AF216530
Length = 72
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/57 (94%), Positives = 55/57 (96%)
Query: 10 GKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
GK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGR LADYNIQKEST
Sbjct: 5 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFGGKQLEDGRNLADYNIQKEST 61
>Os05g0457400 Similar to Ubiquitin
Length = 99
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/56 (94%), Positives = 54/56 (96%)
Query: 11 KSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
+ ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG TLADYNIQKEST
Sbjct: 27 RVITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGCTLADYNIQKEST 82
>Os05g0242133 Ubiquitin domain containing protein
Length = 77
Score = 105 bits (263), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct: 1 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 50
>Os10g0491801
Length = 147
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 51/65 (78%)
Query: 2 QIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
QIFVK LTGK+ L +E SDT+++VK K+ DKEG+PPDQQ LIF G QL+DG TL Y I
Sbjct: 7 QIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTLIYYGI 66
Query: 62 QKEST 66
Q+EST
Sbjct: 67 QEEST 71
>Os08g0185900 Ubiquitin domain containing protein
Length = 212
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFV+T+T + +EV DT+ VKAKIQ K GIP QQRL+FAG+ LEDGRTLA+Y
Sbjct: 1 MQIFVRTVTAGPLAVEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYG 60
Query: 61 IQKES 65
I+KE+
Sbjct: 61 IKKEA 65
>Os07g0492200
Length = 86
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFV+TL + ITLEVE SDTI +VK KI DK GIP D QRL+ AG+QL+D RTLADY
Sbjct: 1 MQIFVRTLD-ECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYG 59
Query: 61 IQKEST 66
IQ E T
Sbjct: 60 IQTEHT 65
>Os10g0491500
Length = 307
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 49/65 (75%)
Query: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQI V L G + TL VE SDT+++VK ++Q+K+G+PP QQRLIF G+QL+DG T+A
Sbjct: 70 MQILVSGLRGNTWTLWVEPSDTVESVKLQLQEKDGLPPCQQRLIFEGRQLDDGDTVASCG 129
Query: 61 IQKES 65
I+K S
Sbjct: 130 IRKHS 134
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 1 MQIFVKTLTGKSIT-LEVESSDTIDNVKAKI--QDKEGIPPDQQRLIFAGKQLEDGRTLA 57
MQIFV+ L GK T L+V+ SDT+ +VK K+ + K+ P +QRL+F+G +L D RTLA
Sbjct: 175 MQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLA 234
Query: 58 DYNIQKEST 66
Y I++EST
Sbjct: 235 SYGIEEEST 243
>D21312
Length = 87
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 34/35 (97%)
Query: 32 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK ST
Sbjct: 1 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKXST 35
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,711,723
Number of extensions: 110995
Number of successful extensions: 373
Number of sequences better than 1.0e-10: 30
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 56
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)