FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0483200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L40e family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0272) R2 : 0.0524
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.288 (0.0573) R2dN8 : 0.0676 R2N8 : 0.0524
σ : 0.513
deviance : 120.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
112.94 0.499 2.81 -0.365 0.046 -0.389 -0.176 2.15 0.243 13.1 1.202 23 -- --
117.65 0.505 2.77 -0.278 0.061 -0.2 0.0711 -- 0.281 13 1.807 24 -- --
113.06 0.495 2.81 -0.367 0.0472 -0.388 -- 2.08 0.243 12.9 1.209 22 -- --
117.49 0.505 2.77 -0.261 0.0638 -0.221 -- -- 0.28 12.8 1.6 17 -- --
112.97 0.495 2.81 -0.369 -- -0.371 -- 2.07 0.24 -- 1.217 20 -- --
119.08 0.512 2.77 -0.199 0.094 -- -0.117 -- 0.263 6.46 -- -- -- --
119.12 0.511 2.77 -0.201 0.0935 -- -- -- 0.264 6.54 -- -- -- --
117.71 0.505 2.77 -0.255 -- -0.197 -- -- 0.277 -- 1.557 17 -- --
119.25 0.509 2.77 -- 0.0475 -0.196 -- -- 0.295 12.2 1.3 17 -- --
119.57 0.511 2.78 -0.198 -- -- -- -- 0.266 -- -- -- -- --
120.18 0.513 2.77 -- 0.0909 -- -- -- 0.286 6.66 -- -- -- --
119.35 0.509 2.77 -- -- -0.158 -- -- 0.302 -- 1.557 17 -- --
120.61 0.513 2.77 -- -- -- -- -- 0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.32 wind 7.0 90 > th dose independent rect. 1 8
2 106.33 wind 7.0 90 > th dose independent rect. 3 6
4 106.34 wind 7.0 90 > th dose dependent rect. 1 8
9 106.39 wind 7.0 90 > th dose independent rect. 7 2
12 106.40 wind 7.0 90 > th dose dependent rect. 7 2
25 108.77 wind 9.0 30 < th dose independent rect. 3 23
26 109.69 atmosphere 1000.0 10 < th dose independent rect. 1 1
33 109.69 atmosphere 1000.0 10 < th dose dependent rect. 1 1
42 109.89 atmosphere 1005.0 30 > th dose dependent rect. 2 1
43 109.96 atmosphere 1005.0 30 > th dose independent rect. 2 1
50 110.08 wind 1.0 30 < th dose independent rect. 2 1
53 110.14 temperature 20.0 30 > th dose dependent rect. 2 1
55 110.16 wind 3.0 30 < th dose dependent rect. 2 1
56 110.18 wind 3.0 10 < th dose dependent rect. 23 4
61 110.29 temperature 20.0 30 > th dose independent rect. 2 1
66 110.38 humidity 80.0 30 > th dose independent rect. 2 1
71 110.43 temperature 10.0 30 > th dose independent rect. 2 1
73 110.43 temperature 30.0 30 < th dose independent rect. 2 1
74 110.43 humidity 50.0 30 > th dose independent rect. 2 1
78 110.43 atmosphere 1010.0 30 < th dose independent rect. 2 1
80 110.43 radiation 1.0 30 < th dose independent rect. 2 1
85 110.43 precipitation 0.1 30 < th dose independent rect. 2 1
86 110.43 temperature 10.0 30 > th dose independent rect. 3 23
87 110.43 radiation 1.0 30 < th dose dependent rect. 2 1
92 110.43 precipitation 0.1 30 < th dose dependent rect. 2 1
93 110.44 humidity 50.0 30 > th dose dependent rect. 2 1
101 110.61 radiation 1.0 14400 < th dose dependent rect. 3 1
113 110.79 wind 9.0 1440 < th dose independent rect. 3 1
114 110.79 temperature 10.0 1440 > th dose independent rect. 3 1
117 110.79 temperature 30.0 1440 < th dose independent rect. 3 1
121 110.79 humidity 50.0 1440 > th dose independent rect. 3 1
131 110.79 atmosphere 995.0 1440 > th dose independent rect. 3 1
132 110.79 radiation 1.0 1440 < th dose independent rect. 3 1
152 110.79 temperature 10.0 1440 > th dose independent rect. 4 23
155 110.79 radiation 1.0 1440 < th dose dependent rect. 3 1
166 110.89 temperature 30.0 30 < th dose dependent rect. 2 1
168 111.04 atmosphere 1015.0 30 < th dose dependent rect. 2 1
192 111.43 wind 1.0 30 > th dose independent rect. 2 1
213 111.57 atmosphere 995.0 30 > th dose independent rect. 3 23
226 111.83 wind 3.0 10 < th dose dependent rect. 14 13
262 112.17 humidity 90.0 10 > th dose independent rect. 23 4
266 112.19 radiation 20.0 270 > th dose dependent rect. 6 1
283 112.25 precipitation 0.1 30 < th dose independent rect. 3 23
284 112.25 precipitation 0.1 30 < th dose dependent rect. 3 23
288 112.32 wind 9.0 30 < th dose independent rect. 15 23
290 112.42 radiation 20.0 270 > th dose independent rect. 6 1
311 112.62 wind 1.0 30 < th dose independent rect. 9 18
313 112.69 humidity 90.0 30 > th dose independent rect. 11 16
317 112.72 wind 3.0 10 < th dose dependent rect. 10 17
327 112.84 radiation 40.0 90 > th dose dependent rect. 8 1
357 113.16 wind 1.0 30 < th dose independent rect. 6 21
362 113.29 wind 1.0 30 < th dose independent rect. 23 4
367 113.33 wind 1.0 30 > th dose independent rect. 15 23
377 113.38 temperature 25.0 10 < th dose dependent rect. 10 1
381 113.40 wind 1.0 30 > th dose independent rect. 3 23
383 113.49 wind 1.0 30 > th dose independent sin 17 NA
385 113.52 humidity 60.0 1440 > th dose independent rect. 19 14
387 113.63 humidity 80.0 30 > th dose dependent rect. 23 4
389 113.66 wind 7.0 10 < th dose independent rect. 3 11
401 113.78 wind 7.0 30 < th dose independent rect. 3 20
404 113.82 humidity 60.0 720 < th dose independent rect. 19 14
414 113.85 temperature 15.0 90 > th dose independent rect. 3 10
419 113.90 wind 3.0 10 < th dose dependent rect. 6 21
428 113.97 wind 5.0 30 > th dose dependent rect. 14 1
431 114.04 wind 1.0 10 > th dose independent rect. 24 23
432 114.04 humidity 50.0 30 > th dose independent rect. 3 23
433 114.04 radiation 20.0 30 < th dose dependent rect. 3 23
434 114.05 temperature 25.0 10 < th dose independent rect. 22 5
469 114.19 humidity 60.0 720 < th dose dependent rect. 19 14
473 114.20 wind 3.0 30 < th dose dependent sin 13 NA
482 114.22 humidity 90.0 10 > th dose dependent rect. 11 16
496 114.29 wind 3.0 10 < th dose dependent rect. 23 1
502 114.32 atmosphere 995.0 10 > th dose dependent rect. 2 14
509 114.34 wind 3.0 270 < th dose dependent rect. 23 1
512 114.36 humidity 90.0 10 > th dose dependent rect. 24 1
521 114.37 humidity 70.0 270 < th dose dependent rect. 19 12
569 114.47 humidity 60.0 720 < th dose dependent rect. 18 16
570 114.48 wind 5.0 30 > th dose independent rect. 14 1
579 114.51 humidity 60.0 1440 > th dose independent rect. 19 5
584 114.51 wind 3.0 30 < th dose dependent rect. 23 12
585 114.51 humidity 90.0 270 > th dose dependent rect. 8 16
591 114.53 wind 9.0 270 < th dose independent rect. 24 23
599 114.55 humidity 70.0 30 < th dose independent rect. 14 1
600 114.55 radiation 20.0 30 > th dose independent rect. 14 1
602 114.55 humidity 90.0 90 > th dose dependent rect. 10 14
608 114.56 temperature 25.0 30 > th dose independent rect. 14 1
619 114.58 atmosphere 1005.0 30 > th dose independent rect. 14 1
623 114.59 humidity 60.0 30 > th dose independent rect. 14 1
625 114.59 atmosphere 1000.0 30 > th dose dependent rect. 14 1
626 114.59 radiation 1.0 30 > th dose dependent rect. 14 1
630 114.60 humidity 50.0 4320 > th dose independent rect. 17 10
631 114.60 humidity 90.0 30 < th dose dependent rect. 14 1
643 114.61 humidity 60.0 1440 > th dose independent rect. 18 1
645 114.61 humidity 50.0 4320 > th dose independent rect. 17 7
647 114.61 temperature 15.0 30 > th dose dependent rect. 14 1
672 114.65 wind 9.0 30 < th dose independent rect. 14 1
673 114.65 temperature 10.0 30 > th dose independent rect. 14 1
675 114.65 temperature 30.0 30 < th dose independent rect. 14 1
676 114.65 atmosphere 995.0 30 > th dose independent rect. 14 1
678 114.65 atmosphere 1010.0 30 < th dose independent rect. 14 1
681 114.65 radiation 40.0 30 < th dose independent rect. 14 1
682 114.65 precipitation 0.1 30 < th dose independent rect. 14 1
687 114.65 temperature 10.0 30 > th dose independent rect. 15 23
688 114.65 precipitation 0.1 30 < th dose dependent rect. 14 1
698 114.67 temperature 10.0 1440 > th dose independent rect. 15 1
711 114.67 humidity 60.0 720 < th dose independent rect. 18 16
712 114.67 temperature 10.0 1440 > th dose independent rect. 16 23
744 114.71 temperature 30.0 30 < th dose independent rect. 3 23
745 114.71 humidity 60.0 1440 < th dose dependent rect. 17 3
784 114.75 humidity 70.0 720 < th dose independent rect. 19 12
789 114.75 atmosphere 1015.0 30 < th dose dependent rect. 23 4
793 114.76 humidity 60.0 720 < th dose independent rect. 18 1
838 114.77 wind 9.0 30 < th dose dependent rect. 3 20
842 114.78 atmosphere 1015.0 30 < th dose dependent rect. 14 1
850 114.79 wind 1.0 30 > th dose independent rect. 16 17
858 114.80 temperature 15.0 90 > th dose independent rect. 3 20
876 114.83 humidity 50.0 4320 < th dose independent rect. 17 1