Os09g0483400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin.
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Os09g0483400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 263.01 | 0.762 | 10.2 | -0.446 | 0.468 | 0.886 | -2.69 | -1.12 | -0.105 | 2.89 | 25.25 | 690 | -- | -- |
| 265.21 | 0.758 | 10.2 | -0.169 | 0.476 | 0.885 | -2.64 | -- | -0.0717 | 2.59 | 25.2 | 684 | -- | -- |
| 286.81 | 0.789 | 10.2 | -0.509 | 0.435 | 0.948 | -- | -1.51 | -0.132 | 3.75 | 25.3 | 722 | -- | -- |
| 289.68 | 0.793 | 10.1 | -0.101 | 0.547 | 0.92 | -- | -- | -0.0341 | 3.72 | 25.2 | 642 | -- | -- |
| 291.52 | 0.795 | 10.2 | -0.695 | -- | 1.15 | -- | -1.93 | -0.21 | -- | 25.2 | 914 | -- | -- |
| 292.13 | 0.801 | 10.1 | 0.0905 | 0.556 | -- | -2.56 | -- | 0.301 | 1.31 | -- | -- | -- | -- |
| 317.9 | 0.835 | 10.1 | 0.182 | 0.569 | -- | -- | -- | 0.318 | 0.306 | -- | -- | -- | -- |
| 299 | 0.805 | 10.1 | -0.105 | -- | 0.998 | -- | -- | -0.0287 | -- | 25.3 | 881 | -- | -- |
| 289.89 | 0.793 | 10.1 | -- | 0.531 | 0.9 | -- | -- | -0.00907 | 3.69 | 25.2 | 643 | -- | -- |
| 338.29 | 0.859 | 10.1 | 0.201 | -- | -- | -- | -- | 0.327 | -- | -- | -- | -- | -- |
| 318.77 | 0.835 | 10.1 | -- | 0.572 | -- | -- | -- | 0.297 | 0.323 | -- | -- | -- | -- |
| 299.27 | 0.806 | 10.1 | -- | -- | 0.978 | -- | -- | -0.0107 | -- | 25.26 | 881 | -- | -- |
| 339.35 | 0.86 | 10.1 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.98 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 2 | 255.46 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 11 | 257.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 14 | 257.60 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 20 | 258.17 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 24 | 258.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 33 | 258.77 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 17 |
| 34 | 258.90 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 38 | 259.05 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 15 |
| 50 | 259.55 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 14 |
| 72 | 260.18 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 91 | 260.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 126 | 261.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 13 |
| 130 | 261.43 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 133 | 261.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 136 | 261.49 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 138 | 261.51 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 150 | 261.66 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 162 | 261.90 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 184 | 262.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 207 | 262.48 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 222 | 262.63 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 253 | 262.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 256 | 262.91 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 3 |
| 276 | 263.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 286 | 263.27 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 304 | 263.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 309 | 263.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 338 | 263.64 | radiation | 1 | 720 | > th | dose independent | sin | 21 | NA |
| 350 | 263.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 18 |
| 369 | 263.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 374 | 263.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 391 | 263.94 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 8 |
| 398 | 263.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 414 | 264.01 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 421 | 264.05 | temperature | 25 | 90 | < th | dose independent | rect. | 7 | 20 |
| 439 | 264.19 | temperature | 25 | 10 | < th | dose independent | rect. | 10 | 18 |
| 481 | 264.45 | temperature | 25 | 10 | < th | dose independent | rect. | 7 | 21 |
| 483 | 264.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 486 | 264.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 19 |
| 525 | 264.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 527 | 264.71 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 23 |
| 538 | 264.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 544 | 264.80 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 545 | 264.80 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 17 |
| 551 | 264.83 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 560 | 264.88 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 22 |
| 566 | 264.90 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 577 | 264.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 655 | 265.27 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 23 |
| 679 | 265.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 14 |
| 685 | 265.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 2 | 19 |
| 690 | 265.44 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 731 | 265.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 739 | 265.57 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 743 | 265.58 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 760 | 265.63 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 23 |
| 790 | 265.73 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 913 | 266.05 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 19 |
| 923 | 266.07 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 23 |
| 935 | 266.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 7 |
| 974 | 266.20 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 23 |