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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0259500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L40e family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0453) R2 : 0.00142
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0768 (0.0955) R2dN8 : 0.00183 R2N8 : 0.00142
σ : 0.854
deviance : 334.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.78 0.835 2.97 0.0186 0.0177 1.15 -0.896 -1.95 0.0384 4.8 -0.09992 3613 -- --
319.47 0.832 2.94 0.0305 0.000831 0.886 0.505 -- 0.0349 16.4 -0.3972 3707 -- --
317.73 0.83 2.98 -0.0391 0.0478 1.21 -- -2.37 0.0279 7.42 0.2092 3613 -- --
321.02 0.834 2.93 0.00498 0.00633 0.844 -- -- 0.0238 16.2 -0.3458 3691 -- --
317.75 0.83 2.98 -0.0236 -- 1.3 -- -2.73 0.0403 -- 0.2442 3613 -- --
331.87 0.854 2.96 0.234 0.0186 -- -0.751 -- -0.0548 5.38 -- -- -- --
333.12 0.855 2.95 0.233 0.0511 -- -- -- -0.0509 10.2 -- -- -- --
320.98 0.834 2.93 0.0223 -- 0.814 -- -- 0.028 -- -0.3344 3699 -- --
320.91 0.834 2.93 -- 0.0354 0.834 -- -- 0.0414 13.2 -0.8843 3699 -- --
333.28 0.853 2.95 0.232 -- -- -- -- -0.051 -- -- -- -- --
334.56 0.856 2.96 -- 0.0501 -- -- -- -0.0769 9.86 -- -- -- --
320.98 0.834 2.94 -- -- 0.816 -- -- 0.0251 -- -0.1789 3699 -- --
334.71 0.854 2.96 -- -- -- -- -- -0.0768 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.79 wind 3e+00 90 > th dose dependent rect. 4 1
2 307.38 wind 3e+00 90 > th dose independent rect. 4 1
3 309.05 precipitation 1e-01 14400 > th dose independent rect. 23 5
6 309.20 precipitation 1e-01 14400 < th dose independent rect. 23 5
7 309.20 precipitation 1e-01 14400 < th dose dependent rect. 23 5
8 309.22 precipitation 1e-01 14400 > th dose dependent rect. 23 5
20 310.38 humidity 9e+01 90 < th dose independent rect. 4 1
27 311.00 humidity 9e+01 10 < th dose independent rect. 4 2
42 312.09 wind 1e+00 4320 < th dose dependent rect. 21 2
43 312.24 wind 1e+00 4320 < th dose dependent rect. 16 8
48 312.43 precipitation 1e-01 14400 > th dose independent rect. 20 8
49 312.44 precipitation 1e-01 14400 < th dose independent rect. 20 8
50 312.44 precipitation 1e-01 14400 < th dose dependent rect. 20 8
59 312.63 precipitation 1e-01 14400 > th dose dependent rect. 20 8
84 312.97 wind 1e+00 4320 < th dose independent rect. 21 2
115 313.39 atmosphere 1e+03 14400 > th dose independent rect. 15 1
118 313.42 precipitation 1e-01 4320 < th dose independent rect. 17 12
119 313.42 precipitation 1e-01 4320 < th dose dependent rect. 17 12
122 313.46 atmosphere 1e+03 14400 < th dose independent rect. 15 2
126 313.52 precipitation 1e-01 4320 > th dose independent rect. 17 12
135 313.65 wind 1e+00 4320 > th dose independent rect. 21 2
151 313.87 wind 1e+00 4320 < th dose independent rect. 17 7
212 314.48 precipitation 1e-01 4320 < th dose independent rect. 22 11
214 314.48 precipitation 1e-01 4320 < th dose dependent rect. 22 11
232 314.61 atmosphere 1e+03 14400 < th dose dependent rect. 20 1
236 314.62 atmosphere 1e+03 14400 > th dose independent rect. 15 21
239 314.62 atmosphere 1e+03 14400 < th dose dependent rect. 15 12
253 314.65 atmosphere 1e+03 14400 < th dose dependent rect. 22 1
254 314.65 atmosphere 1e+03 14400 < th dose dependent rect. 18 6
273 314.68 atmosphere 1e+03 14400 > th dose independent rect. 10 8
274 314.68 atmosphere 1e+03 14400 < th dose independent rect. 10 8
282 314.69 atmosphere 1e+03 14400 < th dose dependent sin 14 NA
313 314.74 atmosphere 1e+03 14400 > th dose independent sin 20 NA
323 314.74 precipitation 1e-01 4320 > th dose dependent rect. 17 12
329 314.75 atmosphere 1e+03 14400 < th dose independent rect. 15 21
336 314.76 atmosphere 1e+03 14400 > th dose independent rect. 7 20
343 314.77 wind 1e+00 4320 > th dose independent rect. 16 8
420 314.83 atmosphere 1e+03 14400 < th dose independent sin 20 NA
429 314.83 atmosphere 1e+03 14400 > th dose independent rect. 24 20
454 314.85 atmosphere 1e+03 14400 < th dose independent rect. 7 20
521 314.89 atmosphere 1e+03 14400 > th dose independent no NA NA
526 314.89 atmosphere 1e+03 14400 > th dose independent rect. 14 13
561 314.90 atmosphere 1e+03 14400 < th dose independent rect. 22 20
604 314.93 wind 1e+00 4320 > th dose independent rect. 18 6
645 314.95 precipitation 1e-01 4320 < th dose independent sin 11 NA
666 314.95 precipitation 1e-01 4320 < th dose dependent sin 11 NA
697 314.97 atmosphere 1e+03 14400 < th dose independent no NA NA
698 314.97 precipitation 1e-01 4320 > th dose independent sin 11 NA
752 314.99 precipitation 1e-01 4320 > th dose dependent rect. 22 11
859 315.07 atmosphere 1e+03 14400 < th dose independent rect. 14 13