Os07g0489500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin.
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Os07g0489500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.16 | 0.581 | 10.3 | 1.18 | 0.551 | -1.75 | 0.199 | -1.36 | -0.375 | 12.2 | 21.8 | 1789 | -- | -- |
| 155.26 | 0.58 | 10.3 | 1.48 | 0.528 | -1.6 | 0.183 | -- | -0.262 | 12.2 | 22.15 | 1856 | -- | -- |
| 151.91 | 0.574 | 10.3 | 1.05 | 0.559 | -1.64 | -- | -1.33 | -0.383 | 12 | 22.1 | 1743 | -- | -- |
| 155.42 | 0.581 | 10.3 | 1.48 | 0.529 | -1.6 | -- | -- | -0.262 | 12.2 | 22.15 | 1856 | -- | -- |
| 161.9 | 0.593 | 10.4 | 1.1 | -- | -1.58 | -- | -0.883 | -0.377 | -- | 22.13 | 1000 | -- | -- |
| 247.58 | 0.738 | 10.4 | 0.831 | 0.569 | -- | 0.118 | -- | -0.804 | 11.9 | -- | -- | -- | -- |
| 247.64 | 0.737 | 10.4 | 0.836 | 0.569 | -- | -- | -- | -0.803 | 11.9 | -- | -- | -- | -- |
| 164.16 | 0.597 | 10.3 | 1.35 | -- | -1.54 | -- | -- | -0.289 | -- | 22.29 | 985 | -- | -- |
| 200.63 | 0.66 | 10.4 | -- | 0.352 | -1.18 | -- | -- | -0.525 | 11.6 | 22.43 | 996 | -- | -- |
| 268 | 0.765 | 10.4 | 0.818 | -- | -- | -- | -- | -0.811 | -- | -- | -- | -- | -- |
| 266.04 | 0.763 | 10.4 | -- | 0.558 | -- | -- | -- | -0.896 | 11.8 | -- | -- | -- | -- |
| 206.98 | 0.67 | 10.4 | -- | -- | -1.25 | -- | -- | -0.516 | -- | 22.35 | 870 | -- | -- |
| 285.66 | 0.789 | 10.4 | -- | -- | -- | -- | -- | -0.902 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 155.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 17 | 158.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 19 | 158.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 27 | 158.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 28 | 158.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 31 | 158.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 40 | 158.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 85 | 159.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 342 | 163.93 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 344 | 163.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 399 | 164.75 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 405 | 164.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 406 | 164.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 409 | 164.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 472 | 165.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 935 | 169.68 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 945 | 169.74 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 978 | 169.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |