Os03g0234200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin.
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Os03g0234200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.39 | 0.383 | 15.3 | 0.495 | 0.983 | 0.916 | 0.664 | -1.48 | 0.0323 | 19.7 | 20.5 | 2826 | -- | -- |
| 69.32 | 0.388 | 15.2 | 0.713 | 0.99 | 1.27 | 0.677 | -- | 0.0904 | 19.6 | 19.7 | 2774 | -- | -- |
| 67.62 | 0.383 | 15.3 | 0.471 | 0.983 | 0.918 | -- | -1.51 | 0.0306 | 19.6 | 20.53 | 2815 | -- | -- |
| 70.63 | 0.391 | 15.2 | 0.727 | 0.977 | 1.34 | -- | -- | 0.119 | 19.7 | 19.3 | 2816 | -- | -- |
| 116.84 | 0.503 | 15.3 | 0.583 | -- | 0.982 | -- | -1.1 | 0.022 | -- | 21.2 | 2184 | -- | -- |
| 97.93 | 0.464 | 15.2 | 1.4 | 0.965 | -- | 0.812 | -- | 0.406 | 19.8 | -- | -- | -- | -- |
| 99.83 | 0.468 | 15.2 | 1.38 | 0.965 | -- | -- | -- | 0.408 | 19.8 | -- | -- | -- | -- |
| 118.35 | 0.507 | 15.2 | 0.75 | -- | 1.33 | -- | -- | 0.115 | -- | 19.4 | 2161 | -- | -- |
| 74.29 | 0.401 | 15.3 | -- | 0.962 | 1.68 | -- | -- | -0.0532 | 19.7 | 18.95 | 10900 | -- | -- |
| 150.27 | 0.573 | 15.1 | 1.37 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 150.2 | 0.573 | 15.2 | -- | 0.956 | -- | -- | -- | 0.254 | 19.9 | -- | -- | -- | -- |
| 123.23 | 0.517 | 15.2 | -- | -- | 1.61 | -- | -- | -0.0366 | -- | 17.6 | 22492 | -- | -- |
| 199.83 | 0.66 | 15.2 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.88 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 4 | 66.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 7 | 66.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 17 | 66.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 31 | 66.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 62 | 66.92 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 67 | 66.95 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 201 | 67.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 275 | 68.28 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 367 | 68.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 375 | 68.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 437 | 68.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 461 | 68.79 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 473 | 68.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 495 | 68.83 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 502 | 68.85 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 519 | 68.88 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 539 | 68.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 555 | 68.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 567 | 68.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 23 |
| 583 | 68.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 622 | 69.09 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 626 | 69.10 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 785 | 69.46 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 786 | 69.46 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 818 | 69.53 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 822 | 69.53 | temperature | 25 | 4320 | < th | dose dependent | sin | 17 | NA |
| 827 | 69.55 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 857 | 69.61 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 5 |