BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0452700 Os09g0452700|Os09g0452700
(140 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0452700 Ubiquitin 254 1e-68
Os09g0483200 Ribosomal protein L40e family protein 209 6e-55
Os07g0489500 Similar to Ubiquitin 203 3e-53
Os09g0483400 Ubiquitin 202 5e-53
Os03g0234200 Ubiquitin 196 3e-51
Os03g0259500 Ribosomal protein L40e family protein 192 9e-50
AK064604 191 1e-49
Os06g0681400 Polyubiquitin 136 6e-33
Os05g0504766 Similar to Polyubiquitin protein (Fragment) 136 6e-33
Os02g0161900 Polyubiquitin 136 6e-33
Os04g0628100 Similar to Polyubiquitin 135 7e-33
AK067024 135 7e-33
Os06g0650100 Similar to Polyubiquitin gene (Fragment) 135 8e-33
Os09g0420800 Similar to Ubiquitin 135 8e-33
Os01g0328400 Ubiquitin 135 9e-33
AK059242 135 9e-33
Os05g0160200 Ubiquitin 135 9e-33
Os06g0673500 Similar to Ubiquitin 134 2e-32
AK108207 133 4e-32
Os08g0187000 133 4e-32
Os01g0641200 Ubiquitin domain containing protein 132 7e-32
Os01g0641400 115 1e-26
AF216530 114 2e-26
Os05g0457400 Similar to Ubiquitin 107 3e-24
Os05g0242133 Ubiquitin domain containing protein 105 1e-23
Os10g0491801 92 2e-19
Os08g0185900 Ubiquitin domain containing protein 89 1e-18
Os07g0492200 88 3e-18
Os10g0491500 79 1e-15
D21312 75 2e-14
>Os09g0452700 Ubiquitin
Length = 140
Score = 254 bits (649), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 126/140 (90%), Positives = 126/140 (90%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST YPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
Query: 121 KCGHSNEIRAKKRFMSKLSK 140
KCGHSNEIRAKKRFMSKLSK
Sbjct: 121 KCGHSNEIRAKKRFMSKLSK 140
>Os09g0483200 Ribosomal protein L40e family protein
Length = 139
Score = 209 bits (532), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/137 (77%), Positives = 113/137 (82%), Gaps = 1/137 (0%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST Y EP+L LA KYNE K+VCR+CYARLP RSTNCRKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYTIQ-EPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKK 119
Query: 121 KCGHSNEIRAKKRFMSK 137
KCGH+N+IR KKRF+SK
Sbjct: 120 KCGHTNQIRPKKRFISK 136
>Os07g0489500 Similar to Ubiquitin
Length = 135
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/136 (74%), Positives = 111/136 (81%), Gaps = 1/136 (0%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST YP IEPNL LA+ E K++CR+CYARLP ++TNCRKK
Sbjct: 61 IQKESTLHLVLRLRGGGRPGYPM-IEPNLLALARSKMEKKMICRKCYARLPYKATNCRKK 119
Query: 121 KCGHSNEIRAKKRFMS 136
KCGH+NE+R KK+ +S
Sbjct: 120 KCGHTNELRPKKKLVS 135
>Os09g0483400 Ubiquitin
Length = 140
Score = 202 bits (515), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/139 (74%), Positives = 111/139 (79%), Gaps = 1/139 (0%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL+DGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST Y EP LR LA KY E K VCR+CYARLP+RS +CRKK
Sbjct: 61 IQKESTLHLVLRLRGGSRGGYTIQ-EPTLRALALKYREKKKVCRKCYARLPIRSHHCRKK 119
Query: 121 KCGHSNEIRAKKRFMSKLS 139
KCGHS E+R KK+F++ LS
Sbjct: 120 KCGHSKELRLKKKFINSLS 138
>Os03g0234200 Ubiquitin
Length = 129
Score = 196 bits (499), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/134 (73%), Positives = 110/134 (82%), Gaps = 7/134 (5%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST IEP+L+ LA+KYN++K++CR+CYARL R+ NCRKK
Sbjct: 61 IQKESTLHLVLRLRGGI-------IEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKK 113
Query: 121 KCGHSNEIRAKKRF 134
KCGHSN++R KK+
Sbjct: 114 KCGHSNQLRPKKKI 127
>Os03g0259500 Ribosomal protein L40e family protein
Length = 136
Score = 192 bits (487), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 97/132 (73%), Positives = 106/132 (80%), Gaps = 5/132 (3%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVE+SD + NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST IEP+LR LA K+N NK+VCR+CYA LP R+TNCRKK
Sbjct: 61 IQKESTLHLVLRLRGGHI-----WIEPSLRVLAYKHNINKMVCRKCYATLPPRATNCRKK 115
Query: 121 KCGHSNEIRAKK 132
KCGHSN++R KK
Sbjct: 116 KCGHSNQLRPKK 127
>AK064604
Length = 128
Score = 191 bits (485), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 108/134 (80%), Gaps = 7/134 (5%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTXXXXXXXXXXXXXXYPKGIEPNLRELAQKYNENKLVCRRCYARLPLRSTNCRKK 120
IQKEST IEP+LR+LAQKYN +K++CR+CYARL R+ NCRKK
Sbjct: 61 IQKESTLHLVLRLRGGI-------IEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKK 113
Query: 121 KCGHSNEIRAKKRF 134
KCGH+N +R KK+
Sbjct: 114 KCGHTNNLRPKKKV 127
>Os06g0681400 Polyubiquitin
Length = 457
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
Query: 61 IQKEST 66
IQKEST
Sbjct: 441 IQKEST 446
>Os05g0504766 Similar to Polyubiquitin protein (Fragment)
Length = 381
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
>Os02g0161900 Polyubiquitin
Length = 457
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKEST 66
IQKEST
Sbjct: 289 IQKEST 294
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364
Query: 61 IQKEST 66
IQKEST
Sbjct: 365 IQKEST 370
Score = 136 bits (342), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440
Query: 61 IQKEST 66
IQKEST
Sbjct: 441 IQKEST 446
>Os04g0628100 Similar to Polyubiquitin
Length = 392
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 88 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 147
Query: 61 IQKEST 66
IQKEST
Sbjct: 148 IQKEST 153
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 164 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 223
Query: 61 IQKEST 66
IQKEST
Sbjct: 224 IQKEST 229
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 240 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 299
Query: 61 IQKEST 66
IQKEST
Sbjct: 300 IQKEST 305
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 316 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 375
Query: 61 IQKEST 66
IQKEST
Sbjct: 376 IQKEST 381
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 65/66 (98%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVE SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 12 MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 71
Query: 61 IQKEST 66
IQKEST
Sbjct: 72 IQKEST 77
>AK067024
Length = 305
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
Score = 135 bits (341), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
Query: 61 IQKEST 66
IQKEST
Sbjct: 213 IQKEST 218
Score = 134 bits (336), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288
Query: 61 IQKES 65
IQKES
Sbjct: 289 IQKES 293
>Os06g0650100 Similar to Polyubiquitin gene (Fragment)
Length = 177
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 25 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 84
Query: 61 IQKEST 66
IQKEST
Sbjct: 85 IQKEST 90
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+
Sbjct: 103 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 162
Query: 63 KEST 66
S
Sbjct: 163 GGSV 166
>Os09g0420800 Similar to Ubiquitin
Length = 153
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+
Sbjct: 79 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 138
Query: 63 KEST 66
S
Sbjct: 139 GGSV 142
>Os01g0328400 Ubiquitin
Length = 155
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>AK059242
Length = 155
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os05g0160200 Ubiquitin
Length = 155
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os06g0673500 Similar to Ubiquitin
Length = 187
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITL VESSD IDNVKAKIQDKEGIPPDQQRLIFA KQLEDGRTLADYN
Sbjct: 77 MQIFVKTLTGKTITLAVESSDKIDNVKAKIQDKEGIPPDQQRLIFADKQLEDGRTLADYN 136
Query: 61 IQKEST 66
IQKEST
Sbjct: 137 IQKEST 142
>AK108207
Length = 159
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>Os08g0187000
Length = 203
Score = 133 bits (334), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 66/66 (100%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGK+ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 114 MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 173
Query: 61 IQKEST 66
IQKEST
Sbjct: 174 IQKEST 179
>Os01g0641200 Ubiquitin domain containing protein
Length = 154
Score = 132 bits (333), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/66 (96%), Positives = 65/66 (98%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 49/66 (74%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
+ + V+TLTGK I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T DY
Sbjct: 77 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYK 136
Query: 61 IQKEST 66
I+ S
Sbjct: 137 IEAGSV 142
>Os01g0641400
Length = 152
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 61/66 (92%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFVKTL G+TITL V+S D+++NVKA+I D+EG+PP QQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLNGRTITLVVDSCDSVENVKARIHDREGVPPHQQRLIFAGKQLEDGRTLADYN 60
Query: 61 IQKEST 66
IQKEST
Sbjct: 61 IQKEST 66
>AF216530
Length = 72
Score = 114 bits (285), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/57 (96%), Positives = 55/57 (96%)
Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGR LADYNIQKEST
Sbjct: 5 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFGGKQLEDGRNLADYNIQKEST 61
>Os05g0457400 Similar to Ubiquitin
Length = 99
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/56 (94%), Positives = 54/56 (96%)
Query: 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
+ ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG TLADYNIQKEST
Sbjct: 27 RVITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGCTLADYNIQKEST 82
>Os05g0242133 Ubiquitin domain containing protein
Length = 77
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Sbjct: 1 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 50
>Os10g0491801
Length = 147
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 51/65 (78%)
Query: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
QIFVK LTGKT L +E SDT+++VK K+ DKEG+PPDQQ LIF G QL+DG TL Y I
Sbjct: 7 QIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTLIYYGI 66
Query: 62 QKEST 66
Q+EST
Sbjct: 67 QEEST 71
>Os08g0185900 Ubiquitin domain containing protein
Length = 212
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFV+T+T + +EV DT+ VKAKIQ K GIP QQRL+FAG+ LEDGRTLA+Y
Sbjct: 1 MQIFVRTVTAGPLAVEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYG 60
Query: 61 IQKES 65
I+KE+
Sbjct: 61 IKKEA 65
>Os07g0492200
Length = 86
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQIFV+TL + ITLEVE SDTI +VK KI DK GIP D QRL+ AG+QL+D RTLADY
Sbjct: 1 MQIFVRTLD-ECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDDRRTLADYG 59
Query: 61 IQKEST 66
IQ E T
Sbjct: 60 IQTEHT 65
>Os10g0491500
Length = 307
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%)
Query: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
MQI V L G T TL VE SDT+++VK ++Q+K+G+PP QQRLIF G+QL+DG T+A
Sbjct: 70 MQILVSGLRGNTWTLWVEPSDTVESVKLQLQEKDGLPPCQQRLIFEGRQLDDGDTVASCG 129
Query: 61 IQKES 65
I+K S
Sbjct: 130 IRKHS 134
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 1 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKI--QDKEGIPPDQQRLIFAGKQLEDGRTLA 57
MQIFV+ L GK T L+V+ SDT+ +VK K+ + K+ P +QRL+F+G +L D RTLA
Sbjct: 175 MQIFVRVLGGKKATALKVQPSDTVGSVKVKLYYRKKKKTMPCKQRLVFSGMELADDRTLA 234
Query: 58 DYNIQKEST 66
Y I++EST
Sbjct: 235 SYGIEEEST 243
>D21312
Length = 87
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 34/35 (97%)
Query: 32 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 66
DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK ST
Sbjct: 1 DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKXST 35
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,711,368
Number of extensions: 113978
Number of successful extensions: 335
Number of sequences better than 1.0e-10: 30
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 56
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)