BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0439100 Os09g0439100|AK110960
(94 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0439100 Similar to Cellulose synthase-like A4 193 3e-50
Os03g0169500 Similar to Cellulose synthase-like A4 142 4e-35
Os10g0406400 Conserved hypothetical protein 139 6e-34
Os02g0192500 Similar to Cellulose synthase-like protein (Fr... 99 5e-22
Os07g0630900 Conserved hypothetical protein 96 6e-21
Os03g0377700 Cellulose synthase-like A5 94 3e-20
Os06g0625700 Conserved hypothetical protein 89 5e-19
>Os09g0439100 Similar to Cellulose synthase-like A4
Length = 94
Score = 193 bits (490), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MDLWYCQPLQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
MDLWYCQPLQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV
Sbjct: 1 MDLWYCQPLQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF
Sbjct: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
>Os03g0169500 Similar to Cellulose synthase-like A4
Length = 624
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/75 (93%), Positives = 73/75 (97%)
Query: 20 KGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMVPEISIPVWGMVCIPTAITI 79
+GVSVWKKLHLLYSFFFVRRVVAPILTFLFY VVIPLSVMVPE+SIPVWGMV IPTAITI
Sbjct: 408 QGVSVWKKLHLLYSFFFVRRVVAPILTFLFYCVVIPLSVMVPEVSIPVWGMVYIPTAITI 467
Query: 80 MNAIRNPGSLHLMPF 94
MNAIRNPGS+HLMPF
Sbjct: 468 MNAIRNPGSIHLMPF 482
>Os10g0406400 Conserved hypothetical protein
Length = 264
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 77/94 (81%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C +K A EI NK VS+WKK HLLYSFFFVRR +APILTFLFY +VIPLS MV
Sbjct: 59 WTCGAANLFRKMAWEIITNKEVSMWKKYHLLYSFFFVRRAIAPILTFLFYCIVIPLSAMV 118
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE++IPVWG+V IPTAITIMNAIRNPGS+HLMPF
Sbjct: 119 PEVTIPVWGLVYIPTAITIMNAIRNPGSVHLMPF 152
>Os02g0192500 Similar to Cellulose synthase-like protein (Fragment)
Length = 521
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 67/94 (71%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EI +NK V++WKK+H++Y+FF +R+++A I+TF FY ++IP ++ V
Sbjct: 316 WSCGPANLFRKMLMEIVRNKKVTIWKKIHVIYNFFLIRKIIAHIVTFAFYCLIIPATIFV 375
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE+ IP WG V IPT IT++N++ P S HL+ F
Sbjct: 376 PEVRIPKWGCVYIPTIITLLNSVGTPRSFHLLFF 409
>Os07g0630900 Conserved hypothetical protein
Length = 320
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C +K A ++ K +S+ KK ++LYSFF VRRVVAP++ + Y +++PLSVM+
Sbjct: 116 WACGGANLFRKIAMDVLVAKDISLLKKFYMLYSFFLVRRVVAPMVACVLYNIIVPLSVMI 175
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNPGSLHLMPF 94
PE+ IP+WG+ IP A+ I+ IRNP +LH+MPF
Sbjct: 176 PELFIPIWGVAYIPMALLIITTIRNPRNLHIMPF 209
>Os03g0377700 Cellulose synthase-like A5
Length = 574
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 59/74 (79%)
Query: 20 KGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMVPEISIPVWGMVCIPTAITI 79
K VS KK+++LYSFF VRRVVAP + F+ Y V+IP+SVM+PE+ +P+WG+ IPTA+ I
Sbjct: 385 KKVSSLKKIYILYSFFLVRRVVAPAVAFILYNVIIPVSVMIPELFLPIWGVAYIPTALLI 444
Query: 80 MNAIRNPGSLHLMP 93
+ AIRNP +LH +P
Sbjct: 445 VTAIRNPENLHTVP 458
>Os06g0625700 Conserved hypothetical protein
Length = 213
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 63/86 (73%), Gaps = 3/86 (3%)
Query: 4 WYCQP---LQKNATEIAKNKGVSVWKKLHLLYSFFFVRRVVAPILTFLFYRVVIPLSVMV 60
W C P +K EIA NK V++WKK++++Y+FF VR+++ I+TF+FY +V+P +V++
Sbjct: 83 WSCGPANLFRKMLVEIATNKKVTLWKKIYVIYNFFLVRKIIGHIVTFVFYCLVVPATVLI 142
Query: 61 PEISIPVWGMVCIPTAITIMNAIRNP 86
PE+ IP WG V +P+ +TI+N+I P
Sbjct: 143 PEVEIPRWGYVYLPSIVTILNSIGTP 168
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.331 0.143 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,050,871
Number of extensions: 95354
Number of successful extensions: 256
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 10
Length of query: 94
Length of database: 17,035,801
Length adjustment: 63
Effective length of query: 31
Effective length of database: 13,746,319
Effective search space: 426135889
Effective search space used: 426135889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 149 (62.0 bits)