BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0416900 Os09g0416900|Os09g0416900
(488 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0416900 Armadillo-like helical domain containing protein 682 0.0
Os05g0573800 99 1e-20
Os06g0102700 Similar to E3 ubiquitin ligase PUB14 (EC 6.3.2... 94 2e-19
Os03g0275900 Similar to Spotted leaf protein 11 (Spotted le... 84 3e-16
Os02g0732200 U box domain containing protein 82 9e-16
Os12g0570000 Similar to Spotted leaf protein 11 (Spotted le... 75 2e-13
Os01g0901000 Similar to Arm repeat-containing protein 73 4e-13
Os07g0584900 Armadillo-like helical domain containing protein 72 1e-12
Os12g0103700 69 8e-12
>Os09g0416900 Armadillo-like helical domain containing protein
Length = 488
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/488 (77%), Positives = 376/488 (77%)
Query: 1 MVARCAHADVGGGFRLWPIFSAAALRRKLLEVLTCXXXXXXXXXXXXXSCRSKNGYXXXX 60
MVARCAHADVGGGFRLWPIFSAAALRRKLLEVLTC SCRSKNGY
Sbjct: 1 MVARCAHADVGGGFRLWPIFSAAALRRKLLEVLTCGGGGGGGGGAGGGSCRSKNGYRSPQ 60
Query: 61 XXXXXXXDRLAELLRAEPSECGXXXXXXXXXXXXXXXXXXXXXXXGALQACXXXXXXXXX 120
DRLAELLRAEPSECG GALQAC
Sbjct: 61 PRPRPRSDRLAELLRAEPSECGDEADDADAAVKKVEALEKLKVVVGALQACDGDNAGIGG 120
Query: 121 XXXMCRVEAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYAL 180
MCRVEAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESD MVAAALYAL
Sbjct: 121 GGDMCRVEAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDGGGGGEEMVAAALYAL 180
Query: 181 LNLGIGNDTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGA 240
LNLGIGNDTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGA
Sbjct: 181 LNLGIGNDTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGA 240
Query: 241 APFLVRAFEAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXX 300
APFLVRAFEAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPS
Sbjct: 241 APFLVRAFEAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSLVAAVGDAPAAADR 300
Query: 301 XXXXXXXXXXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADR 360
PEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADR
Sbjct: 301 ALAALCNLVAACPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADR 360
Query: 361 AAMAEAGATSALLELTLVGTALAQKRASRILEILRADKGKQVADAAGIVATMSXXXXXXX 420
AAMAEAGATSALLELTLVGTALAQKRASRILEILRADKGKQVADAAGIVATMS
Sbjct: 361 AAMAEAGATSALLELTLVGTALAQKRASRILEILRADKGKQVADAAGIVATMSAPQERGG 420
Query: 421 XXXXXXXXXXXXXMSNEKRAVRQLVQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTAS 480
MSNEKRAVRQLVQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTAS
Sbjct: 421 GGGARQEEADEAGMSNEKRAVRQLVQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTAS 480
Query: 481 STSKSLPF 488
STSKSLPF
Sbjct: 481 STSKSLPF 488
>Os05g0573800
Length = 378
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 153/356 (42%), Gaps = 20/356 (5%)
Query: 133 VRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGIGNDTNKA 192
V R A+ D G + +L LG +PPLV+ML ++ M AA L G NK
Sbjct: 36 VGRLARSDEGRKRLLPELGVVPPLVSMLADARGGGAGARMAAAGALLELARGAHR--NKV 93
Query: 193 AIVQAGAVHKM-LRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFLVRAFEAA 251
IVQAG + K+ L + + E + S + + P+ +S PFLV A
Sbjct: 94 HIVQAGLLKKLPLLMDDKDMSRSQELALLLLSISSLANTDFPL-ASSELLPFLVAVLSAD 152
Query: 252 PTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXXXXXXXXXXXXX 311
+ L AL NLS + + S+G +
Sbjct: 153 DAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSLDRKTSEAALSVLGDLAATA 212
Query: 312 XPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAMAEAGATSA 371
GR + A A V+ + W D P CQE AAY+ MVLAH S R M G A
Sbjct: 213 A--GREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAHGSRLQRRRMRRFGVVQA 270
Query: 372 LLELTLVGTALAQKRASRILEILRADKGKQVADAAGIVATMSXXXXXXXXXXXXXXXXXX 431
LLE++L+G+ LAQ+RA++IL+ + + ++ +G
Sbjct: 271 LLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSG---------PRMEGASSASCDDGG 321
Query: 432 XXMSNEKRAVRQLVQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTASSTSKSLP 487
+ + AV ++V+QSL NM+ I+RRA DL ++K L SS+SKSLP
Sbjct: 322 EGAKDRRNAVDRIVKQSLDRNMKSILRRATASVDLT-----SVKLLVGSSSSKSLP 372
>Os06g0102700 Similar to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical
U-box domain protein 14)
Length = 611
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 125/268 (46%), Gaps = 12/268 (4%)
Query: 129 AATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGIGND 188
AA +R AK + R +A GAIP LV +L SD A+ ALLNL I ++
Sbjct: 343 AAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEH-----AVTALLNLSI-HE 396
Query: 189 TNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFLVRAF 248
NKA+IV + A+ K++ + + S E A LS +D NK IGA+GA P L+
Sbjct: 397 NNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLL 456
Query: 249 -EAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXXXXXXXXX 307
+ +P + + DA A+ NL I N + AG+
Sbjct: 457 CDGSP---RGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLS 513
Query: 308 XXXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAMAEAG 367
PEG+ ++R+ + +P V+V+ + P +E AA IL +L A AG
Sbjct: 514 ILAGNPEGKIVIARS-EPIPPLVEVIK-TGSPRNRENAAAILWLLCSADTEQTLAAKAAG 571
Query: 368 ATSALLELTLVGTALAQKRASRILEILR 395
AL EL+ GT A+++AS ILE++
Sbjct: 572 VEDALKELSETGTDRAKRKASSILELMH 599
>Os03g0275900 Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell
death-related protein SPL11)
Length = 726
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 121/267 (45%), Gaps = 12/267 (4%)
Query: 128 EAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGIGN 187
EAA ++R+ AK R + GAIP LV++L +D + A LLNL I
Sbjct: 407 EAAGMLRQLAKRSPENRACIGDAGAIPILVSLLSITDVSTQEHVVTA-----LLNLSI-Y 460
Query: 188 DTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFLVRA 247
+ NKA I+ +GAV ++ + + S E A LS +D NK IGASGA P LV
Sbjct: 461 EENKARIITSGAVPGVVHVLKRGSMEARENSAATLFSLSLVDENKITIGASGAIPALVLL 520
Query: 248 FEAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXXXXXXXXX 307
+++ + DA AL NL I N + AGL P
Sbjct: 521 LSNG--SQRGKRDAATALFNLCIYQGNKGKAVRAGLIPVLLGLVTETESGMMDEALAILA 578
Query: 308 XXXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADR--AAMAE 365
PEG+ A+S A +A+P V V+ + +E AA +L+ L + + A E
Sbjct: 579 ILSSHPEGKTAISSA-NAIPMLVGVIR-NGSARNKENAAAVLVHLCNGEQQQQHLAEAQE 636
Query: 366 AGATSALLELTLVGTALAQKRASRILE 392
G + L EL GT +++A ++LE
Sbjct: 637 QGIVTLLEELAKSGTDRGKRKAIQLLE 663
>Os02g0732200 U box domain containing protein
Length = 637
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 122/271 (45%), Gaps = 12/271 (4%)
Query: 126 RVEAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGI 185
R AA +R AK R +LA GAI LV +L D A+ ALLNL I
Sbjct: 371 RKSAAAEIRSLAKKSTDNRILLAESGAISALVKLLSSKDLKTQEH-----AVTALLNLSI 425
Query: 186 GNDTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGAS-GAAPFL 244
D NK IV AGA+ ++++ E A LS +D NK IG++ GA L
Sbjct: 426 -YDQNKELIVVAGAIVPIIQVLRKGGMEARENAAAAIFSLSLIDDNKITIGSTPGAIEAL 484
Query: 245 VRAFEAAPTTEQARHDALRALLNLSIAPANAPHLLSAG-LAPSXXXXXXXXXXXXXXXXX 303
V ++ + + R DA AL NL I AN + AG LAP
Sbjct: 485 VELLQSG--SPRGRKDAATALFNLCIYQANKVRAVRAGILAPLIQMLQDSSRNGAIDEAL 542
Query: 304 XXXXXXXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAM 363
E + A+++A A+P +D+L S + +E AA IL+ L + + A +
Sbjct: 543 TILSVLVSHHECKIAIAKA-HAIPFLIDLLR-SSQARNKENAAAILLALCKKDAENLACI 600
Query: 364 AEAGATSALLELTLVGTALAQKRASRILEIL 394
GA L EL+ GT A+++A+ +LE L
Sbjct: 601 GRLGAQIPLTELSKTGTDRAKRKATSLLEHL 631
>Os12g0570000 Similar to Spotted leaf protein 11 (Spotted leaf11) (Cell
death-related protein SPL11)
Length = 637
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 121/268 (45%), Gaps = 16/268 (5%)
Query: 129 AATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGIGND 188
AA +R AK +A R +A GAIP L+++L SD A+ ALLNL I D
Sbjct: 330 AAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEH-----AVTALLNLSIHED 384
Query: 189 TNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFLVRAF 248
NKA+I+ +GAV ++ + + S E A LS +D K IG GA P LV
Sbjct: 385 -NKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLL 443
Query: 249 EAAPTTEQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXXXXXXXXXX 308
+++ + DA AL NL I N + AGL P
Sbjct: 444 GEG--SQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSI 501
Query: 309 XXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLA----HRSYADRAAMA 364
PEG+ A+ A + VP V+++ S P +E AA +++ L H + RA
Sbjct: 502 LSSHPEGKAAIGAA-EPVPVLVEMIG-SGTPRNRENAAAVMLHLCSGEHHLVHLARA--Q 557
Query: 365 EAGATSALLELTLVGTALAQKRASRILE 392
E G L EL L GT +++A ++LE
Sbjct: 558 ECGIMVPLRELALNGTDRGKRKAVQLLE 585
>Os01g0901000 Similar to Arm repeat-containing protein
Length = 800
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 121/284 (42%), Gaps = 14/284 (4%)
Query: 125 CRVEAATVVRRKAKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLG 184
CR+ +R KDD AR + G LV L + A+ AL NL
Sbjct: 457 CRL--VEQIRYLLKDDEEARIQMGSNGFAEALVQFLRNAVQDGNEKAQEIGAM-ALFNLA 513
Query: 185 IGNDTNKAAIVQAGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFL 244
+ N+ NK ++ AG + ++ ++ L+ A +L LS L K IIG+S A FL
Sbjct: 514 VNNNRNKGLLLSAGVIDQLEQMISNPR--LSAPATALYLNLSCLPEAKNIIGSSQAVSFL 571
Query: 245 V-RAF--EAAPTT-EQARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXX-- 298
V R F EA T +HDAL L NLS A+ P LLSAG+ +
Sbjct: 572 VDRLFSHEARDTKGSSCKHDALYTLYNLSNHQASVPSLLSAGIVEALHSLLSESLASEGL 631
Query: 299 --XXXXXXXXXXXXXXPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRS 356
GR+ + P + +L+ + EP QE++ L+V+
Sbjct: 632 GWTEKALAVLISLAATQAGRKDIMSTPGLISTLAMLLD-TGEPTEQEQSVSCLLVMCSAD 690
Query: 357 YADRAAMAEAGATSALLELTLVGTALAQKRASRILEILRADKGK 400
A + + G +L+ ++ GT ++++ ++L++ R + +
Sbjct: 691 DKCIAPVLQEGVVPSLVSISATGTGKGKEKSQKLLKLFREQRQR 734
>Os07g0584900 Armadillo-like helical domain containing protein
Length = 467
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 114/263 (43%), Gaps = 12/263 (4%)
Query: 137 AKDDAGAREMLAMLGAIPPLVAMLDESDXXXXXXXMVAAALYALLNLGIGNDTNKAAIVQ 196
AK + RE++ + GAIP LV +L +D +A+ ALLNL + + N++AI
Sbjct: 198 AKHRSDIRELIGVSGAIPALVPLLRSTDPVAQE-----SAVTALLNLSL-EERNRSAITA 251
Query: 197 AGAVHKMLRIAEGASGVLTEALVANFLCLSALDANKPIIGASGAAPFLVRAFEAAPTTEQ 256
AGA+ ++ + + L LS ++ N+ IGA GA P LV A T +
Sbjct: 252 AGAIKPLVYALRTGTASAKQNAACALLSLSGIEENRATIGACGAIPPLVALLSAGST--R 309
Query: 257 ARHDALRALLNLSIAPANAPHLLSAGLAPSXXXXXXXXXXXXXXXXXXXXXXXXXXPEGR 316
+ DAL L L A N +SAG EGR
Sbjct: 310 GKKDALTTLYRLCSARRNKERAVSAGAVVPLIHLVGERGSGTSEKAMVVLASLAGIVEGR 369
Query: 317 RAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYI-LMVLAHRSYADRAAMAEAGATSALLEL 375
AV A +PA V+ + D P + + A + L+ L +RA + GA L+ L
Sbjct: 370 DAVVEA-GGIPALVETIE--DGPAREREFAVVALLQLCSECPRNRALLVREGAIPPLVAL 426
Query: 376 TLVGTALAQKRASRILEILRADK 398
+ G+A A+ +A +L LR +
Sbjct: 427 SQSGSARAKHKAETLLGYLREQR 449
>Os12g0103700
Length = 142
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 316 RRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAMAEAGATSA 371
R+ +R+P P DVLNWSD+P CQEKAAYILMVLAHRSYA + + G+ A
Sbjct: 53 RQRTARSPHFTPRAADVLNWSDKPVCQEKAAYILMVLAHRSYASWSPLPRRGSQDA 108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,046,001
Number of extensions: 328617
Number of successful extensions: 917
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 11
Length of query: 488
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 383
Effective length of database: 11,553,331
Effective search space: 4424925773
Effective search space used: 4424925773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)