FiT-DB / Search/ Help/ Sample detail

Os02g0732200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : U box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.98 (0.0458) R2 : 0.48
β1 : -2.34 (0.172) R2dD : 0.23 R2D : 0.117
β2 : 1.46 (0.12) R2dC : 0.17 R2C : 0.158
β3 : 1.66 (0.131) R2dE : 0.196 R2E : 0.0769
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.216 (0.0978) R2dN8 : 0.00736 R2N8 : -0.00491
σ : 0.857
deviance : 338.39
__
_____
C
peak time of C : 18.2
E
wheather : temperature
threshold : 27.01
memory length : 1234
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.5 0.861 6.99 -2.51 1.44 1.72 1.15 -1 -0.175 18.4 27.76 1243 -- --
335.34 0.853 6.98 -2.32 1.46 1.65 1.16 -- -0.213 18.4 27.05 1246 -- --
338.31 0.857 6.99 -2.47 1.46 1.72 -- -0.579 -0.233 18.2 27.08 1238 -- --
338.39 0.857 6.98 -2.34 1.46 1.66 -- -- -0.216 18.2 27.01 1234 -- --
390.33 0.92 7 -2.44 -- 2.5 -- -0.558 -0.404 -- 25.2 713 -- --
449.22 0.994 6.98 -1.81 1.4 -- 1.39 -- -0.218 19.2 -- -- -- --
453.91 0.998 6.98 -1.84 1.41 -- -- -- -0.213 19 -- -- -- --
390.64 0.921 6.98 -2.36 -- 2.44 -- -- -0.403 -- 25.1 712 -- --
470.81 1.01 6.9 -- 1.42 1.24 -- -- 0.218 18.4 28.8 1196 -- --
558.62 1.1 6.95 -1.87 -- -- -- -- -0.239 -- -- -- -- --
542.9 1.09 6.93 -- 1.43 -- -- -- -0.00827 18.9 -- -- -- --
530.52 1.07 6.92 -- -- 2.02 -- -- -0.121 -- 25.13 606 -- --
650.51 1.19 6.9 -- -- -- -- -- -0.032 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.57 humidity 70 14400 < th dose dependent rect. 18 1
2 339.39 humidity 70 14400 < th dose dependent rect. 17 3
3 339.40 humidity 70 14400 < th dose dependent rect. 17 14
4 339.50 humidity 70 14400 < th dose dependent rect. 17 5
15 340.18 humidity 60 14400 < th dose independent rect. 17 2
16 340.42 humidity 80 1440 < th dose dependent rect. 15 6
18 340.45 temperature 30 1440 < th dose independent sin 12 NA
19 340.57 temperature 30 1440 > th dose independent rect. 15 4
34 340.61 temperature 30 1440 < th dose independent rect. 15 13
37 340.69 temperature 30 1440 < th dose independent rect. 15 16
40 340.73 temperature 30 1440 > th dose independent sin 12 NA
41 340.74 temperature 30 1440 < th dose independent rect. 15 10
42 340.74 temperature 25 1440 > th dose dependent rect. 15 4
45 340.78 temperature 25 1440 > th dose dependent rect. 15 2
48 340.83 temperature 30 1440 < th dose independent rect. 15 4
65 341.48 temperature 30 1440 < th dose independent rect. 15 21
67 341.74 humidity 60 14400 > th dose independent rect. 17 2
70 341.84 temperature 30 1440 < th dose independent rect. 15 19
74 341.96 wind 7 43200 > th dose independent rect. 17 21
76 341.98 humidity 60 14400 < th dose independent rect. 17 15
82 342.07 wind 7 43200 < th dose independent rect. 17 21
84 342.09 temperature 30 1440 > th dose independent rect. 15 21
87 342.20 wind 5 43200 > th dose dependent rect. 16 22
94 342.38 humidity 60 14400 < th dose independent rect. 17 5
111 342.46 temperature 30 1440 > th dose independent rect. 15 19
138 342.67 wind 3 43200 > th dose dependent rect. 2 13
150 342.78 temperature 30 1440 < th dose independent rect. 9 19
156 342.81 temperature 30 1440 < th dose independent rect. 9 22
162 342.84 temperature 30 1440 < th dose independent rect. 9 16
191 342.91 temperature 30 1440 < th dose independent rect. 9 10
192 342.91 temperature 30 1440 < th dose independent rect. 9 13
197 342.97 temperature 30 1440 < th dose independent rect. 17 23
205 343.10 temperature 30 1440 < th dose independent rect. 17 19
214 343.16 humidity 60 14400 > th dose independent rect. 17 7
218 343.17 humidity 60 14400 > th dose independent rect. 17 15
219 343.18 temperature 30 1440 > th dose dependent sin 16 NA
222 343.19 humidity 60 14400 > th dose independent rect. 17 11
281 343.39 temperature 30 1440 > th dose dependent rect. 14 22
283 343.40 wind 3 43200 > th dose dependent sin 4 NA
288 343.44 temperature 30 1440 < th dose independent rect. 6 22
315 343.47 temperature 30 1440 < th dose independent rect. 22 21
321 343.48 temperature 30 1440 < th dose independent no NA NA
322 343.48 temperature 30 1440 < th dose independent rect. 24 19
327 343.48 temperature 30 1440 < th dose independent rect. 2 23
330 343.48 temperature 30 1440 < th dose independent rect. 24 23
377 343.54 temperature 30 1440 < th dose independent rect. 2 17
397 343.56 temperature 30 1440 < th dose independent rect. 6 13
461 343.64 temperature 30 1440 > th dose independent rect. 17 19
510 343.76 temperature 30 1440 > th dose dependent no NA NA
603 343.78 temperature 30 1440 > th dose independent rect. 9 10
628 343.82 wind 5 43200 > th dose independent rect. 1 15
632 343.82 temperature 30 1440 > th dose dependent rect. 17 23
671 343.96 temperature 30 14400 > th dose dependent rect. 17 2
685 343.97 wind 5 43200 < th dose independent rect. 1 15
704 344.06 wind 5 43200 > th dose independent rect. 21 19
707 344.07 wind 5 43200 < th dose independent rect. 21 19
708 344.08 wind 5 43200 < th dose independent sin 3 NA
715 344.10 wind 5 43200 > th dose independent sin 3 NA
721 344.11 temperature 30 1440 > th dose independent rect. 17 23
784 344.20 humidity 70 1440 < th dose independent rect. 15 16
791 344.24 temperature 30 1440 > th dose dependent sin 11 NA
816 344.27 humidity 70 1440 < th dose independent rect. 15 5
893 344.55 temperature 30 1440 > th dose independent no NA NA
895 344.55 humidity 70 1440 < th dose independent sin 13 NA