Os07g0584900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os07g0584900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.83 | 0.325 | 12 | -0.469 | 1.23 | 1.44 | -1.12 | 4.74 | 0.0147 | 12 | 0.3246 | 1434 | -- | -- |
| 53.63 | 0.344 | 11.9 | -0.113 | 0.883 | -0.373 | -1.02 | -- | 0.0425 | 12 | 16.98 | 3137 | -- | -- |
| 51.16 | 0.333 | 12 | -0.469 | 1.36 | 1.42 | -- | 4.76 | 0.0225 | 12 | 0.3084 | 1473 | -- | -- |
| 57.9 | 0.357 | 11.9 | -0.148 | 0.882 | -0.367 | -- | -- | 0.0368 | 12.2 | 13.63 | 3391 | -- | -- |
| 73.34 | 0.401 | 12 | -0.241 | -- | -0.88 | -- | 0.989 | 0.0046 | -- | 0.4 | 1308 | -- | -- |
| 56.08 | 0.351 | 11.9 | -0.106 | 1.27 | -- | -0.979 | -- | 0.0443 | 12 | -- | -- | -- | -- |
| 60.19 | 0.363 | 11.9 | -0.144 | 1.28 | -- | -- | -- | 0.0405 | 12.1 | -- | -- | -- | -- |
| 67.42 | 0.384 | 11.9 | -0.163 | -- | -1.02 | -- | -- | 0.0258 | -- | 13.63 | 3391 | -- | -- |
| 58.48 | 0.358 | 11.9 | -- | 0.887 | -0.364 | -- | -- | 0.0533 | 12.3 | 13.63 | 3391 | -- | -- |
| 163.1 | 0.597 | 12 | -0.185 | -- | -- | -- | -- | 0.0219 | -- | -- | -- | -- | -- |
| 60.73 | 0.365 | 11.9 | -- | 1.28 | -- | -- | -- | 0.0566 | 12.1 | -- | -- | -- | -- |
| 68.12 | 0.386 | 11.9 | -- | -- | -1.03 | -- | -- | 0.0438 | -- | 13.63 | 3391 | -- | -- |
| 164 | 0.598 | 11.9 | -- | -- | -- | -- | -- | 0.0424 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.06 | temperature | 15 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 9 | 45.24 | temperature | 15 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 16 | 45.32 | temperature | 15 | 14400 | < th | dose independent | sin | 17 | NA |
| 20 | 45.35 | temperature | 15 | 14400 | > th | dose independent | sin | 18 | NA |
| 22 | 45.35 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 58 | 45.58 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 20 |
| 59 | 45.58 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 20 |
| 104 | 45.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 116 | 45.90 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 140 | 45.98 | temperature | 15 | 14400 | > th | dose independent | sin | 22 | NA |
| 149 | 46.05 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 152 | 46.05 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 15 |
| 154 | 46.05 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 155 | 46.05 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 172 | 46.14 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 182 | 46.16 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 183 | 46.17 | temperature | 15 | 14400 | < th | dose independent | sin | 0 | NA |
| 204 | 46.21 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 205 | 46.22 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 209 | 46.22 | temperature | 15 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 221 | 46.25 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 338 | 46.49 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 406 | 46.67 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 416 | 46.69 | temperature | 15 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 417 | 46.70 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 419 | 46.70 | temperature | 15 | 270 | > th | dose independent | rect. | 3 | 10 |
| 443 | 46.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 464 | 46.79 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 18 |
| 471 | 46.81 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 22 |
| 484 | 46.82 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 491 | 46.83 | temperature | 15 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 495 | 46.84 | temperature | 15 | 43200 | < th | dose dependent | sin | 14 | NA |
| 539 | 46.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 566 | 46.90 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 584 | 46.92 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 3 |
| 595 | 46.93 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 597 | 46.93 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 629 | 46.95 | humidity | 80 | 43200 | > th | dose independent | rect. | 1 | 17 |
| 671 | 46.99 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 686 | 47.00 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 690 | 47.00 | temperature | 15 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 693 | 47.00 | humidity | 70 | 43200 | > th | dose dependent | rect. | 24 | 18 |
| 705 | 47.01 | temperature | 15 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 748 | 47.04 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 755 | 47.04 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 769 | 47.05 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 797 | 47.06 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 829 | 47.09 | temperature | 15 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 864 | 47.15 | humidity | 70 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 867 | 47.15 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 23 |
| 889 | 47.19 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 902 | 47.20 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 928 | 47.24 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 10 |
| 943 | 47.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 952 | 47.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 960 | 47.28 | humidity | 70 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 978 | 47.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 996 | 47.32 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |