Os05g0573800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0573800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.44 | 0.408 | 8.78 | 1.49 | 1.27 | -3.1 | 0.295 | -5.21 | 0.155 | 1.27 | 0.3929 | 4500 | -- | -- |
| 86.9 | 0.434 | 8.91 | 0.87 | 1.2 | -2.06 | -0.461 | -- | 0.00409 | 1.18 | 1.08 | 4548 | -- | -- |
| 75.61 | 0.405 | 8.77 | 1.46 | 1.16 | -3.05 | -- | -5.1 | 0.15 | 1.11 | 0.3792 | 4467 | -- | -- |
| 87.95 | 0.437 | 8.89 | 0.817 | 1.29 | -2.13 | -- | -- | 0.0217 | 1.64 | 0.8875 | 4591 | -- | -- |
| 97.47 | 0.46 | 8.76 | 1.39 | -- | -2.76 | -- | -4.45 | 0.0911 | -- | 0.4532 | 14187 | -- | -- |
| 145.05 | 0.565 | 8.81 | 1.38 | 0.689 | -- | -0.64 | -- | 0.363 | 0.947 | -- | -- | -- | -- |
| 146.73 | 0.567 | 8.8 | 1.41 | 0.692 | -- | -- | -- | 0.366 | 1.1 | -- | -- | -- | -- |
| 103.61 | 0.474 | 8.89 | 0.953 | -- | -1.76 | -- | -- | -0.104 | -- | 1.827 | 15592 | -- | -- |
| 102.62 | 0.472 | 8.89 | -- | 1.42 | -2.51 | -- | -- | -0.0733 | 1.69 | 0.7735 | 4599 | -- | -- |
| 176.44 | 0.621 | 8.79 | 1.43 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 198.95 | 0.66 | 8.84 | -- | 0.716 | -- | -- | -- | 0.209 | 1.18 | -- | -- | -- | -- |
| 100.12 | 0.466 | 8.92 | -- | -- | -1.86 | -- | -- | -0.122 | -- | 1.007 | 29960 | -- | -- |
| 230.67 | 0.709 | 8.83 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 2 | 72.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 3 | 73.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 4 | 73.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 6 | 73.55 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 9 | 73.75 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 11 | 73.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 9 |
| 12 | 73.89 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 13 | 73.93 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 14 | 73.93 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 24 | 74.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 32 | 74.25 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 35 | 74.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 42 | 74.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 44 | 74.35 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 47 | 74.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 48 | 74.37 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 49 | 74.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 64 | 74.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 66 | 74.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 83 | 74.54 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 91 | 74.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 95 | 74.58 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 97 | 74.58 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 98 | 74.59 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 107 | 74.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 19 |
| 119 | 74.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 125 | 74.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 142 | 74.70 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 163 | 74.75 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 169 | 74.77 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 174 | 74.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 179 | 74.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 187 | 74.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 188 | 74.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 197 | 74.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 205 | 74.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 19 |
| 210 | 74.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 235 | 74.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 243 | 74.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 283 | 75.01 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 287 | 75.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 290 | 75.02 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 294 | 75.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 296 | 75.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 305 | 75.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 13 |
| 312 | 75.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 335 | 75.07 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 383 | 75.14 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 392 | 75.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 406 | 75.20 | radiation | 1 | 43200 | < th | dose dependent | sin | 10 | NA |
| 407 | 75.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 408 | 75.20 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 478 | 75.26 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 501 | 75.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 513 | 75.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 518 | 75.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 523 | 75.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 534 | 75.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 549 | 75.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 576 | 75.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 581 | 75.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 582 | 75.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 599 | 75.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 13 |
| 621 | 75.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 622 | 75.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 654 | 75.48 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 655 | 75.48 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 672 | 75.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 680 | 75.51 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 717 | 75.59 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 728 | 75.61 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 736 | 75.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 19 |
| 747 | 75.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 761 | 75.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 810 | 75.67 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 812 | 75.67 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 944 | 75.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 951 | 75.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 974 | 75.84 | humidity | 90 | 43200 | < th | dose independent | sin | 4 | NA |
| 993 | 75.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |