BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0573800 Os05g0573800|Os05g0573800
(378 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0573800 454 e-128
Os09g0416900 Armadillo-like helical domain containing protein 90 3e-18
>Os05g0573800
Length = 378
Score = 454 bits (1168), Expect = e-128, Method: Compositional matrix adjust.
Identities = 258/360 (71%), Positives = 258/360 (71%)
Query: 19 KRLSFXXXXXXXXXXXXXXXXXXSDEGRKRXXXXXXXXXXXXSMXXXXXXXXXXXXXXXX 78
KRLSF SDEGRKR SM
Sbjct: 19 KRLSFGTAEERAEAAGEVGRLARSDEGRKRLLPELGVVPPLVSMLADARGGGAGARMAAA 78
Query: 79 XXXXXXXXXXXXNKVHIVQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANTDFPLAS 138
NKVHIVQAG ANTDFPLAS
Sbjct: 79 GALLELARGAHRNKVHIVQAGLLKKLPLLMDDKDMSRSQELALLLLSISSLANTDFPLAS 138
Query: 139 SELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSLDRKTS 198
SELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSLDRKTS
Sbjct: 139 SELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSLDRKTS 198
Query: 199 EAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAHGSRLQ 258
EAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAHGSRLQ
Sbjct: 199 EAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAHGSRLQ 258
Query: 259 RRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGASSASCD 318
RRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGASSASCD
Sbjct: 259 RRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGASSASCD 318
Query: 319 DGGEGAKDRRNAVDRIVKQSLDRNMKSILRRATASVDLTXXXXXXXXXXXXXXPCETLHP 378
DGGEGAKDRRNAVDRIVKQSLDRNMKSILRRATASVDLT PCETLHP
Sbjct: 319 DGGEGAKDRRNAVDRIVKQSLDRNMKSILRRATASVDLTSVKLLVGSSSSKSLPCETLHP 378
>Os09g0416900 Armadillo-like helical domain containing protein
Length = 488
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 208 LAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAHGSRLQRRRMRRFGV 267
+AA GR + A A V+ + W D P CQE AAY+ MVLAH S R M G
Sbjct: 309 VAACPEGRRAVSRAPDAVPAFVDVLNWSDEPGCQEKAAYILMVLAHRSYADRAAMAEAGA 368
Query: 268 VQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGASSASCDDGGEGA--- 324
ALLE++L+G+ LAQ+RA++IL+ + + ++ +G + SA + GG G
Sbjct: 369 TSALLELTLVGTALAQKRASRILEILRADKGKQVADAAG--IVATMSAPQERGGGGGARQ 426
Query: 325 --------KDRRNAVDRIVKQSLDRNMKSILRRATASVDL 356
+ + AV ++V+QSL NM+ I+RRA DL
Sbjct: 427 EEADEAGMSNEKRAVRQLVQQSLQSNMRRIVRRARLPQDL 466
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,042,462
Number of extensions: 296227
Number of successful extensions: 1308
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)