Os09g0416900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os09g0416900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.55 | 0.487 | 11 | 0.726 | 0.438 | -1.76 | 0.712 | -1.09 | -0.276 | 8.88 | 21.53 | 1500 | -- | -- |
| 107.5 | 0.483 | 10.9 | 0.872 | 0.428 | -1.54 | 0.802 | -- | -0.199 | 8.48 | 22.1 | 1402 | -- | -- |
| 109.01 | 0.486 | 11 | 0.785 | 0.411 | -1.7 | -- | -0.807 | -0.261 | 9.14 | 21.71 | 1495 | -- | -- |
| 109.42 | 0.487 | 10.9 | 0.903 | 0.434 | -1.55 | -- | -- | -0.192 | 8.93 | 22.1 | 1450 | -- | -- |
| 116.16 | 0.502 | 11 | 0.765 | -- | -1.68 | -- | -0.88 | -0.262 | -- | 21.8 | 2087 | -- | -- |
| 194.86 | 0.654 | 11 | 0.312 | 0.442 | -- | 0.63 | -- | -0.703 | 9.14 | -- | -- | -- | -- |
| 196.15 | 0.656 | 11 | 0.336 | 0.438 | -- | -- | -- | -0.701 | 9.52 | -- | -- | -- | -- |
| 114.77 | 0.499 | 10.9 | 0.826 | -- | -1.44 | -- | -- | -0.211 | -- | 22.3 | 971 | -- | -- |
| 127.43 | 0.526 | 11 | -- | 0.356 | -1.27 | -- | -- | -0.349 | 8.01 | 22.33 | 1162 | -- | -- |
| 207.45 | 0.673 | 11.1 | 0.333 | -- | -- | -- | -- | -0.7 | -- | -- | -- | -- | -- |
| 199.13 | 0.66 | 11 | -- | 0.437 | -- | -- | -- | -0.739 | 9.46 | -- | -- | -- | -- |
| 130.81 | 0.533 | 11 | -- | -- | -1.25 | -- | -- | -0.35 | -- | 22.34 | 844 | -- | -- |
| 210.38 | 0.677 | 11.1 | -- | -- | -- | -- | -- | -0.737 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 28 | 111.37 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 52 | 112.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 56 | 112.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 64 | 112.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 68 | 112.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 86 | 112.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 228 | 114.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 329 | 115.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 383 | 116.33 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 394 | 116.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 401 | 116.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 457 | 117.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 524 | 117.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 671 | 119.24 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 725 | 119.70 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 862 | 121.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 885 | 121.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 903 | 121.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 931 | 121.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 962 | 122.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 999 | 122.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 13 |