BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0573800 Os05g0573800|Os05g0573800
(378 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27430.1 | chr2:11729914-11733170 REVERSE LENGTH=439 191 4e-49
AT2G25130.1 | chr2:10695243-10696959 REVERSE LENGTH=469 110 2e-24
AT4G31890.1 | chr4:15427290-15429049 REVERSE LENGTH=519 105 3e-23
AT1G67530.1 | chr1:25308229-25311081 FORWARD LENGTH=783 67 2e-11
AT1G24330.1 | chr1:8631779-8634835 FORWARD LENGTH=772 65 7e-11
AT1G27910.1 | chr1:9720962-9723975 REVERSE LENGTH=769 50 2e-06
>AT2G27430.1 | chr2:11729914-11733170 REVERSE LENGTH=439
Length = 438
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 139/231 (60%), Gaps = 9/231 (3%)
Query: 130 ANTDFPLASSELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALL 189
NT P+ASS++LPFL+ +++D TK CL + NL LE+ + +GAV LL
Sbjct: 192 TNTQLPVASSQILPFLMDTMNSDSTDMKTKEICLATISNLCLVLENAGPLVLNGAVETLL 251
Query: 190 ALSLDRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAM 249
+L + SE AL+ LG L T G++ ME+ + L+E +TW D P+CQE+AAY+ M
Sbjct: 252 SLMSTKDLSEKALASLGKLVVTQMGKKAMEDCLLVSKGLIEILTWEDIPKCQEYAAYILM 311
Query: 250 VLAHGSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRM 309
VLAH S QR +M + G+V LLEVSLLGSPL Q+RA K+LQWFK+E R+ HSGP+
Sbjct: 312 VLAHQSWSQREKMAKAGIVPVLLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGPHSGPQT 371
Query: 310 EGASSA-----SCDDGGEGAKDRRNAVDRIVKQSLDRNMKSILRRATASVD 355
S S G EG K +N +VKQSL +NM+ I RR ++
Sbjct: 372 GWVSPGMGSPMSPRSGEEGRKMMKN----LVKQSLYKNMEMITRRGNLDME 418
>AT2G25130.1 | chr2:10695243-10696959 REVERSE LENGTH=469
Length = 468
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%)
Query: 136 LASSELLPFLVAVLS--ADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSL 193
+ SS + FLV L + + + + L AL+NLS ++V + + + LL
Sbjct: 235 IGSSGAIIFLVKTLKNFEETSSSQAREDALRALYNLSIYHQNVSFILETDLIPFLLNTLG 294
Query: 194 DRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAH 253
D + SE L++L ++ + GR+ + E A LV+ + W+D+ +CQE A Y+ M++AH
Sbjct: 295 DMEVSERILAILTNVVSVPEGRKAIGEVVEAFPILVDVLNWNDSIKCQEKAVYILMLMAH 354
Query: 254 GSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGAS 313
R M G+ +LLE++L+GSPLAQ+RA+++L+ + D+ + S P + G S
Sbjct: 355 KGYGDRNAMIEAGIESSLLELTLVGSPLAQKRASRVLECLRV--VDKGKQVSAP-IYGTS 411
Query: 314 SASCDDGGE-GAKDRRNAVDRIVKQSLDRNMKSILRRATASVDLT 357
S + G + D R AV ++V+QSL NMK I++RA D
Sbjct: 412 SLGRERGHDLRMTDERKAVKQLVQQSLQSNMKRIVKRANLPHDFV 456
>AT4G31890.1 | chr4:15427290-15429049 REVERSE LENGTH=519
Length = 518
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 14/234 (5%)
Query: 136 LASSELLPFLVAVLSADDAPADTKL--PCLGALHNLSAKLEHVRDVASSGAVRALLALSL 193
+ SS + FLV L D + ++ L AL+NLS +V + + + LL
Sbjct: 268 IGSSGAIIFLVKTLQNLDETSSSQAREDALRALYNLSIYQPNVSFILETDLITYLLNTLG 327
Query: 194 DRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAH 253
D + SE L++L +L A GR+ + A LV+ + W D+P CQE A Y+ M++AH
Sbjct: 328 DMEVSERILAILSNLVAVPEGRKAIGLVCDAFPVLVDVLNWTDSPGCQEKATYILMLMAH 387
Query: 254 GSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGAS 313
R+ M G+ ALLE++LLGS LAQ+RA++IL+ + + ++ +G GA
Sbjct: 388 KGYGDRQVMIEAGIESALLELTLLGSALAQKRASRILECLRVDKGKQVLDSTGSC--GAL 445
Query: 314 SASC----DDGGEGAKD------RRNAVDRIVKQSLDRNMKSILRRATASVDLT 357
SA D+G + ++ R AV ++V+QSL NMK I++RA D
Sbjct: 446 SAPIYGTRDNGLDHEENDLMMSEERKAVKQLVQQSLQSNMKRIVKRANLPQDFV 499
>AT1G67530.1 | chr1:25308229-25311081 FORWARD LENGTH=783
Length = 782
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 5/168 (2%)
Query: 136 LASSELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRAL---LALS 192
+ SS+ +PFLV +L + KL L AL+NLS ++ + SS +++L LA +
Sbjct: 547 IGSSQAVPFLVQLLQ-KEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLAST 605
Query: 193 LDRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLA 252
+ E +L+VL +LA++ G++E + +L + D QE A ++L
Sbjct: 606 GENLWIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE-QEQAVSCLLILC 664
Query: 253 HGSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDR 300
+G + + + GV+ +L+ +S+ G+P + ++ K+L F+EE Q R
Sbjct: 665 NGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQR 712
>AT1G24330.1 | chr1:8631779-8634835 FORWARD LENGTH=772
Length = 771
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Query: 136 LASSELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRAL--LALSL 193
+ SS+ + F V +L D KL L AL+NLS ++ + SS +++L LA +
Sbjct: 547 IGSSQAVSFFVNLL-LQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTG 605
Query: 194 DRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDAPRCQEHAAYLAMVLAH 253
+ E +L+VL +LA++ G+EEM + L + D QE A ++L
Sbjct: 606 NHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVE-QEQAVSCLVILCT 664
Query: 254 GSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKEEGQDRIRAHSGPRMEGA 312
GS + + + GV+ +L+ +S+ GSP + ++ K+L F+E+ R R P E A
Sbjct: 665 GSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQ---RHRDQPSPNKEEA 720
>AT1G27910.1 | chr1:9720962-9723975 REVERSE LENGTH=769
Length = 768
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 8/164 (4%)
Query: 136 LASSELLPFLVAVLSADDAPADTKLPCLGALHNLSAKLEHVRDVASSGAVRALLALSL-- 193
+ SS +PF+V +L + K+ L +L +LS ++ + S+ V AL +L++
Sbjct: 545 IGSSLAVPFMVNLLWTE-TEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISD 603
Query: 194 DRKTSEAALSVLGDLAATAAGREEMEEDEAAPRALVEAMTWHDA--PRCQEHAAYLAMVL 251
+++ +E +L+VL +L AG++EM +AP + T D P QE A L ++L
Sbjct: 604 EQRWTEKSLAVLLNLVLNEAGKDEMV---SAPSLVSNLCTILDTGEPNEQEQAVSLLLIL 660
Query: 252 AHGSRLQRRRMRRFGVVQALLEVSLLGSPLAQRRAAKILQWFKE 295
+ S + + + GV+ +L+ +S+ G+ + RA K+L F+E
Sbjct: 661 CNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRE 704
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.129 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,647,004
Number of extensions: 153180
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 10
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)