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Os06g0102700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.82 (0.0193) R2 : 0.00146
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0332 (0.0407) R2dN8 : 0.00189 R2N8 : 0.00146
σ : 0.364
deviance : 60.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.13 0.266 9.84 -0.449 0.571 0.0695 0.356 1.36 -0.0299 1.91 47.91 723 -- --
33.58 0.272 9.84 -0.537 0.513 -0.454 0.227 -- -0.0439 1.62 47.69 11370 -- --
32.33 0.265 9.85 -0.469 0.569 0.0461 -- 1.65 -0.0417 1.68 48.57 872 -- --
33.78 0.272 9.84 -0.544 0.515 -0.443 -- -- -0.0453 1.64 47.95 11461 -- --
48.23 0.325 9.84 -0.544 -- -0.811 -- 0.176 -0.0421 -- 45.74 1286 -- --
35 0.277 9.84 -0.514 0.559 -- 0.168 -- -0.033 1.51 -- -- -- --
35.11 0.277 9.84 -0.519 0.559 -- -- -- -0.034 1.52 -- -- -- --
47.69 0.323 9.84 -0.527 -- -0.717 -- -- -0.0362 -- 40 1263 -- --
38.59 0.289 9.83 -- 0.556 0.35 -- -- -0.025 1.71 48.73 15699 -- --
54.28 0.344 9.83 -0.497 -- -- -- -- -0.0219 -- -- -- -- --
42.22 0.304 9.83 -- 0.55 -- -- -- 0.0238 1.49 -- -- -- --
44.58 0.311 9.81 -- -- -0.709 -- -- 0.0575 -- -37.55 76 -- --
60.79 0.364 9.82 -- -- -- -- -- 0.0332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.85 temperature 25.0 90 > th dose independent rect. 20 7
2 29.90 temperature 25.0 270 > th dose dependent rect. 20 11
3 30.11 atmosphere 1015.0 90 < th dose dependent rect. 15 17
8 30.32 atmosphere 1005.0 270 > th dose independent rect. 17 9
10 30.34 temperature 30.0 270 < th dose independent rect. 7 7
21 30.43 temperature 25.0 270 > th dose dependent rect. 20 5
22 30.44 temperature 25.0 270 < th dose independent rect. 13 17
24 30.45 temperature 30.0 270 < th dose independent rect. 8 17
46 30.57 temperature 30.0 270 < th dose independent rect. 6 21
48 30.58 temperature 25.0 270 > th dose independent rect. 18 13
80 30.71 temperature 25.0 270 > th dose dependent rect. 22 2
84 30.73 temperature 30.0 270 < th dose independent rect. 8 4
99 30.76 temperature 30.0 10 < th dose independent rect. 11 16
122 30.83 atmosphere 1015.0 30 < th dose dependent rect. 12 21
125 30.84 radiation 1.0 10 > th dose dependent rect. 9 3
138 30.89 temperature 25.0 90 > th dose independent rect. 22 5
151 30.93 temperature 30.0 10 < th dose independent rect. 9 7
153 30.93 atmosphere 995.0 90 > th dose dependent rect. 19 9
159 30.96 temperature 25.0 90 > th dose independent sin 11 NA
161 30.96 temperature 30.0 10 < th dose independent rect. 9 18
171 30.99 temperature 30.0 270 < th dose independent rect. 20 16
172 30.99 temperature 30.0 270 < th dose independent rect. 17 21
176 31.00 radiation 1.0 10 > th dose independent rect. 9 7
194 31.04 temperature 30.0 270 < th dose independent rect. 17 10
209 31.08 temperature 25.0 270 > th dose independent rect. 22 2
211 31.08 atmosphere 995.0 10 > th dose independent rect. 9 7
212 31.08 radiation 10.0 270 < th dose independent rect. 17 10
224 31.10 humidity 90.0 270 < th dose independent rect. 18 7
244 31.13 atmosphere 995.0 270 > th dose dependent rect. 17 9
254 31.15 temperature 10.0 270 > th dose dependent rect. 3 15
256 31.16 wind 1.0 270 > th dose independent rect. 18 9
257 31.16 humidity 60.0 270 > th dose independent rect. 17 10
264 31.18 precipitation 0.1 270 < th dose independent rect. 17 10
268 31.18 precipitation 0.1 270 < th dose dependent rect. 17 10
281 31.21 radiation 30.0 270 < th dose independent rect. 1 7
285 31.21 radiation 10.0 270 < th dose dependent rect. 17 10
298 31.23 temperature 10.0 270 > th dose dependent rect. 1 7
299 31.24 temperature 15.0 270 > th dose independent rect. 18 9
313 31.25 atmosphere 995.0 90 > th dose independent rect. 9 18
319 31.26 temperature 30.0 10 < th dose independent rect. 9 5
325 31.26 temperature 30.0 10 < th dose independent rect. 11 14
329 31.26 temperature 10.0 270 > th dose dependent rect. 18 7
347 31.29 temperature 15.0 270 > th dose independent rect. 8 17
348 31.29 precipitation 0.1 270 < th dose independent rect. 8 17
350 31.29 precipitation 0.1 270 < th dose dependent rect. 8 17
351 31.30 radiation 10.0 720 > th dose independent rect. 16 1
355 31.30 radiation 40.0 1440 < th dose dependent rect. 21 8
374 31.34 wind 9.0 270 < th dose independent rect. 1 7
375 31.34 temperature 10.0 270 > th dose independent rect. 1 7
377 31.34 temperature 30.0 270 < th dose independent rect. 1 7
378 31.34 humidity 50.0 270 > th dose independent rect. 1 7
381 31.34 atmosphere 995.0 270 > th dose independent rect. 1 7
382 31.34 atmosphere 1015.0 270 < th dose independent rect. 1 7
383 31.34 precipitation 0.1 270 < th dose independent rect. 1 7
387 31.34 temperature 10.0 10 > th dose dependent rect. 3 6
388 31.34 precipitation 0.1 270 < th dose dependent rect. 1 7
394 31.35 temperature 20.0 30 > th dose independent rect. 3 6
397 31.35 wind 9.0 270 < th dose independent rect. 17 10
412 31.36 temperature 10.0 270 > th dose independent rect. 3 14
413 31.36 atmosphere 1015.0 270 < th dose independent rect. 3 14
423 31.37 wind 1.0 270 > th dose independent rect. 12 8
426 31.37 precipitation 0.1 270 < th dose independent rect. 3 14
430 31.37 precipitation 0.1 270 < th dose dependent rect. 3 14
431 31.38 temperature 10.0 1440 > th dose independent rect. 4 6
434 31.38 atmosphere 995.0 1440 > th dose independent rect. 4 6
435 31.38 atmosphere 1015.0 1440 < th dose independent rect. 4 6
440 31.38 atmosphere 995.0 270 > th dose independent rect. 18 9
448 31.38 temperature 10.0 1440 > th dose independent rect. 10 18
457 31.39 wind 9.0 270 < th dose independent rect. 3 14
459 31.39 temperature 15.0 30 > th dose independent rect. 9 18
466 31.40 temperature 25.0 90 < th dose independent sin 12 NA
483 31.40 wind 9.0 270 < th dose independent rect. 8 17
487 31.40 radiation 1.0 10 > th dose dependent rect. 11 1
495 31.41 radiation 40.0 30 < th dose independent rect. 3 8
504 31.42 temperature 30.0 10 < th dose independent rect. 11 3
505 31.42 temperature 10.0 270 > th dose independent rect. 7 5
506 31.42 atmosphere 995.0 270 > th dose independent rect. 7 5
507 31.42 atmosphere 1015.0 270 < th dose independent rect. 7 5
514 31.42 temperature 10.0 270 > th dose independent rect. 12 19
518 31.43 precipitation 0.1 270 < th dose independent rect. 7 5
521 31.43 humidity 90.0 90 < th dose independent rect. 20 10
524 31.43 wind 9.0 270 < th dose independent rect. 12 19
525 31.43 precipitation 0.1 270 < th dose dependent rect. 7 5
540 31.44 temperature 10.0 10 > th dose independent rect. 9 7
542 31.44 atmosphere 1015.0 10 < th dose independent rect. 9 7
543 31.44 precipitation 0.1 10 < th dose independent rect. 9 7
548 31.44 temperature 10.0 10 > th dose independent rect. 16 17
554 31.44 precipitation 0.1 10 < th dose dependent rect. 9 7
558 31.45 wind 9.0 270 < th dose independent rect. 7 5
567 31.45 temperature 30.0 10 < th dose independent rect. 9 16
568 31.45 wind 9.0 10 < th dose independent rect. 16 17
580 31.46 radiation 10.0 30 > th dose independent rect. 11 1
594 31.47 radiation 30.0 90 < th dose independent rect. 3 6
599 31.47 radiation 40.0 90 < th dose independent rect. 15 17
600 31.47 atmosphere 1015.0 270 < th dose dependent rect. 1 6
604 31.48 temperature 30.0 10 < th dose independent rect. 11 5
605 31.48 temperature 30.0 90 < th dose independent rect. 3 6
615 31.49 humidity 60.0 90 > th dose independent rect. 3 6
616 31.49 wind 9.0 10 < th dose independent rect. 9 7
625 31.49 atmosphere 995.0 30 > th dose dependent rect. 11 16
626 31.50 radiation 1.0 270 > th dose independent rect. 8 4
641 31.50 radiation 40.0 270 < th dose dependent rect. 1 7
645 31.50 atmosphere 995.0 90 > th dose dependent rect. 9 18
646 31.51 wind 9.0 90 < th dose independent rect. 3 6
647 31.51 temperature 10.0 90 > th dose independent rect. 3 6
650 31.51 atmosphere 995.0 90 > th dose independent rect. 3 6
651 31.51 atmosphere 1015.0 90 < th dose independent rect. 3 6
668 31.51 radiation 40.0 10 < th dose independent rect. 16 17
683 31.53 temperature 30.0 1440 > th dose independent rect. 12 2
711 31.54 atmosphere 1015.0 30 < th dose dependent rect. 1 8
716 31.55 radiation 10.0 30 > th dose independent rect. 9 3
718 31.55 precipitation 0.1 90 < th dose independent rect. 3 6
721 31.55 humidity 60.0 14400 > th dose independent rect. 20 9
726 31.55 precipitation 0.1 90 < th dose dependent rect. 3 6
762 31.56 atmosphere 1015.0 270 < th dose dependent rect. 3 2
764 31.56 humidity 50.0 270 > th dose dependent rect. 1 6
766 31.56 atmosphere 1015.0 270 < th dose dependent rect. 12 7
772 31.57 temperature 30.0 30 < th dose independent rect. 11 1
779 31.57 temperature 15.0 270 > th dose independent rect. 20 16
785 31.58 radiation 10.0 270 < th dose independent rect. 3 3
786 31.58 wind 1.0 30 > th dose independent rect. 4 5
798 31.58 humidity 90.0 270 < th dose independent rect. 18 18
803 31.59 wind 1.0 30 > th dose independent rect. 9 3
804 31.59 temperature 10.0 1440 > th dose independent rect. 10 3
807 31.59 atmosphere 995.0 1440 > th dose independent rect. 10 3
816 31.59 temperature 10.0 1440 > th dose independent rect. 13 21
829 31.60 wind 1.0 270 > th dose independent rect. 8 4
868 31.61 temperature 15.0 30 > th dose independent rect. 9 16
870 31.61 precipitation 0.1 270 < th dose independent rect. 6 21
881 31.61 precipitation 0.1 270 < th dose dependent rect. 6 21
901 31.62 radiation 40.0 30 < th dose independent rect. 1 10
907 31.62 precipitation 0.1 270 < th dose independent rect. 12 19
917 31.62 precipitation 0.1 270 < th dose dependent rect. 12 19
931 31.63 temperature 10.0 270 > th dose dependent rect. 3 3
945 31.64 atmosphere 995.0 270 > th dose independent rect. 6 21
946 31.64 radiation 10.0 270 < th dose dependent rect. 3 3
981 31.65 temperature 10.0 30 > th dose dependent rect. 1 8
989 31.66 wind 9.0 270 < th dose independent rect. 3 3
990 31.66 temperature 10.0 270 > th dose independent rect. 3 3
992 31.66 temperature 10.0 30 > th dose independent rect. 9 3
994 31.66 temperature 30.0 270 < th dose independent rect. 3 3
995 31.66 humidity 50.0 270 > th dose independent rect. 3 3
998 31.66 atmosphere 995.0 270 > th dose independent rect. 3 3
999 31.66 atmosphere 995.0 30 > th dose independent rect. 9 3
1000 31.66 atmosphere 1015.0 270 < th dose independent rect. 3 3