Os01g0901000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Arm repeat-containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0901000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Arm repeat-containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.61 | 0.338 | 8.62 | 0.223 | 0.25 | 0.353 | -0.684 | 1.14 | 0.14 | 8.23 | 25.88 | 1224 | -- | -- |
| 52.49 | 0.337 | 8.64 | 0.0207 | 0.232 | 0.415 | -0.63 | -- | 0.0963 | 7.55 | 25.9 | 1283 | -- | -- |
| 52.91 | 0.339 | 8.62 | 0.261 | 0.28 | 0.363 | -- | 1.49 | 0.15 | 8.4 | 25.57 | 1116 | -- | -- |
| 53.53 | 0.341 | 8.65 | -0.0701 | 0.272 | 0.494 | -- | -- | 0.0804 | 8.47 | 25.82 | 1168 | -- | -- |
| 56.35 | 0.35 | 8.62 | 0.307 | -- | 0.293 | -- | 1.48 | 0.168 | -- | 25.97 | 1283 | -- | -- |
| 60.84 | 0.366 | 8.65 | 0.0922 | 0.236 | -- | -0.746 | -- | 0.108 | 7.72 | -- | -- | -- | -- |
| 62.32 | 0.37 | 8.65 | 0.0715 | 0.243 | -- | -- | -- | 0.108 | 7.05 | -- | -- | -- | -- |
| 56.87 | 0.351 | 8.66 | -0.0666 | -- | 0.439 | -- | -- | 0.0993 | -- | 26.6 | 1304 | -- | -- |
| 53.62 | 0.341 | 8.65 | -- | 0.263 | 0.466 | -- | -- | 0.118 | 8.23 | 27.05 | 1201 | -- | -- |
| 65.43 | 0.378 | 8.66 | 0.0763 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 62.45 | 0.37 | 8.65 | -- | 0.244 | -- | -- | -- | 0.0998 | 7.03 | -- | -- | -- | -- |
| 56.98 | 0.352 | 8.66 | -- | -- | 0.426 | -- | -- | 0.11 | -- | 26.72 | 1301 | -- | -- |
| 65.58 | 0.378 | 8.66 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.81 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 16 | 50.07 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 17 | 50.10 | humidity | 50.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 33 | 50.72 | humidity | 70.0 | 720 | < th | dose independent | rect. | 17 | 3 |
| 45 | 50.73 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 46 | 50.76 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 48 | 50.76 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 61 | 50.77 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 62 | 50.77 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 66 | 50.90 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 68 | 50.90 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 69 | 50.93 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 70 | 50.98 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 74 | 51.04 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 89 | 51.06 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 104 | 51.15 | humidity | 70.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 117 | 51.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 186 | 51.29 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 187 | 51.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 188 | 51.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 215 | 51.41 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 222 | 51.43 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 224 | 51.44 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 229 | 51.46 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 257 | 51.52 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 258 | 51.53 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 262 | 51.53 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 263 | 51.54 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 264 | 51.54 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 269 | 51.54 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 272 | 51.55 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 273 | 51.55 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 280 | 51.57 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 297 | 51.58 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 303 | 51.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 14 | 12 |
| 304 | 51.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 313 | 51.60 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 317 | 51.60 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 349 | 51.64 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 377 | 51.66 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 389 | 51.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 397 | 51.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 436 | 51.73 | humidity | 70.0 | 720 | < th | dose independent | sin | 12 | NA |
| 438 | 51.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 442 | 51.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 451 | 51.76 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 8 |
| 466 | 51.78 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 472 | 51.80 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 494 | 51.83 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 499 | 51.84 | wind | 7.0 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 505 | 51.85 | wind | 7.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 516 | 51.87 | wind | 7.0 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 518 | 51.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 519 | 51.87 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 521 | 51.87 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 524 | 51.88 | temperature | 20.0 | 43200 | < th | dose independent | sin | 23 | NA |
| 525 | 51.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 527 | 51.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 533 | 51.88 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 536 | 51.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 6 |
| 544 | 51.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 546 | 51.89 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 549 | 51.90 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 556 | 51.90 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 559 | 51.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 565 | 51.91 | wind | 1.0 | 14400 | < th | dose independent | rect. | 14 | 12 |
| 568 | 51.91 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 17 |
| 573 | 51.92 | wind | 7.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 574 | 51.92 | wind | 7.0 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 578 | 51.93 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 590 | 51.93 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 591 | 51.94 | temperature | 20.0 | 43200 | > th | dose independent | sin | 23 | NA |
| 614 | 51.95 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 654 | 51.99 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 685 | 52.00 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 688 | 52.00 | wind | 7.0 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 695 | 52.01 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 708 | 52.02 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 721 | 52.03 | wind | 1.0 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 762 | 52.05 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 791 | 52.06 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 14 | 12 |
| 801 | 52.07 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 805 | 52.07 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 9 |
| 825 | 52.08 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 11 |
| 851 | 52.10 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 852 | 52.10 | radiation | 1.0 | 720 | > th | dose independent | rect. | 18 | 1 |
| 869 | 52.10 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 903 | 52.11 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 2 |
| 937 | 52.12 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 988 | 52.14 | wind | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |