BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0412300 Os09g0412300|J065192K01
(75 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0412300 Calcium-binding EF-hand domain containing protein 145 6e-36
Os03g0812800 80 4e-16
Os04g0492800 Similar to Calmodulin (CaM) 77 2e-15
Os03g0813500 77 3e-15
Os07g0223900 76 5e-15
Os12g0228800 Similar to Calmodulin-like protein 71 1e-13
Os11g0600500 EF-Hand type domain containing protein 71 2e-13
Os03g0812400 EF-Hand type domain containing protein 70 3e-13
Os12g0140000 67 2e-12
Os11g0143800 67 3e-12
Os12g0140200 Zinc finger, RING-type domain containing protein 64 3e-11
>Os09g0412300 Calcium-binding EF-hand domain containing protein
Length = 75
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR
Sbjct: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
Query: 61 VDFREFLKFMETAAA 75
VDFREFLKFMETAAA
Sbjct: 61 VDFREFLKFMETAAA 75
>Os03g0812800
Length = 200
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 47/69 (68%)
Query: 6 GEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFRE 65
GE AFRVFDR+GDG++ A EL SVL LG GA H +C RMI A+D D DGR+ F+E
Sbjct: 132 GELREAFRVFDRDGDGYVSAAELRSVLRRLGMEEGARHGDCVRMIAAHDGDGDGRISFQE 191
Query: 66 FLKFMETAA 74
F ME AA
Sbjct: 192 FRAMMENAA 200
>Os04g0492800 Similar to Calmodulin (CaM)
Length = 250
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 44/65 (67%)
Query: 6 GEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFRE 65
G+ AFRVFD NGDG+I ELG+VLASLG G EC+RMI D D DGRVDF E
Sbjct: 177 GDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHE 236
Query: 66 FLKFM 70
FL+ M
Sbjct: 237 FLQMM 241
>Os03g0813500
Length = 207
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%)
Query: 2 EATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRV 61
E L A RVFDR+GDG++ A EL SVL LG GA H +C RMI A+D D DGR+
Sbjct: 135 EGELRPAGGVPRVFDRDGDGYVSAAELRSVLRRLGMEEGARHGDCVRMIAAHDGDGDGRI 194
Query: 62 DFREFLKFMETAA 74
F+EF ME AA
Sbjct: 195 SFQEFRAMMENAA 207
>Os07g0223900
Length = 192
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%)
Query: 3 ATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVD 62
A+ GE AF VFDRN DGFI A EL SV+ LGF G + +C RMI +D D+DGR+
Sbjct: 116 ASEGELKDAFYVFDRNEDGFICASELWSVMRRLGFKEGQRYEDCMRMIHTFDEDRDGRIS 175
Query: 63 FREFLKFMETAA 74
+ EF + ME A+
Sbjct: 176 YLEFRRMMEDAS 187
>Os12g0228800 Similar to Calmodulin-like protein
Length = 168
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 42/60 (70%)
Query: 11 AFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFREFLKFM 70
AF VFD+NGDGFI EL SVL+SLG G +C+RMI DAD DGRVDF+EF + M
Sbjct: 99 AFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 158
>Os11g0600500 EF-Hand type domain containing protein
Length = 191
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
+E +L E AF VFD + DG+IDA +L VL +LG G G EC++MI YD ++D R
Sbjct: 117 DEPSLDEVKQAFLVFDEDNDGYIDALDLYRVLRNLGLREGVGVDECEQMIAKYDMNRDRR 176
Query: 61 VDFREFLKFMETA 73
+D EF++ +E +
Sbjct: 177 IDMVEFIRVLEAS 189
>Os03g0812400 EF-Hand type domain containing protein
Length = 213
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%)
Query: 6 GEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFRE 65
GE AF VFDR+ DG++ A EL +V+ LG GA + +C RMI AYD D DGR+ F+E
Sbjct: 145 GELREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQE 204
Query: 66 FLKFMETA 73
F ME A
Sbjct: 205 FRAMMENA 212
>Os12g0140000
Length = 98
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
++A+ E AF VFD +GDGFI EL SV+ LG AGH EC+RM+ +D D DG
Sbjct: 25 KQASWEELEEAFSVFDGDGDGFISPLELQSVMRRLGLQHDAGHEECERMLKVFDRDGDGM 84
Query: 61 VDFREFLKFME 71
++F EF M+
Sbjct: 85 INFDEFKVMMQ 95
>Os11g0143800
Length = 146
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 44/71 (61%)
Query: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
++A+ E AF VFD +GDGFI EL +V+ LG AGH EC+RM+ +D D DG
Sbjct: 73 KQASWEELEEAFSVFDGDGDGFISPLELQNVMRRLGLQHDAGHEECERMLKVFDRDGDGM 132
Query: 61 VDFREFLKFME 71
++F EF M+
Sbjct: 133 INFDEFKVMMQ 143
>Os12g0140200 Zinc finger, RING-type domain containing protein
Length = 328
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1 EEATLGEAAAAFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGR 60
++A+ E AF VFD +GDGFI EL +V+ L AGH EC+RM+ +D D DG
Sbjct: 246 KQASWEELEEAFSVFDGDGDGFISPLELQNVMRRLCLQRDAGHEECERMLKVFDRDGDGM 305
Query: 61 VDFREFLKFME 71
++F EF M+
Sbjct: 306 INFDEFKVMMQ 316
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,644,203
Number of extensions: 102496
Number of successful extensions: 661
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 12
Length of query: 75
Length of database: 17,035,801
Length adjustment: 46
Effective length of query: 29
Effective length of database: 14,633,957
Effective search space: 424384753
Effective search space used: 424384753
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)