Os12g0228800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calmodulin-like protein.
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Os12g0228800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calmodulin-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 357.38 | 0.888 | 4.12 | -0.776 | 1.68 | -2.06 | -2.51 | 9.17 | 7.02 | 1.47 | 27.1 | 2976 | -- | -- |
| 389.66 | 0.919 | 4.29 | -1.47 | 1.65 | -2.56 | -2.12 | -- | 7.08 | 1.66 | 20 | 21720 | -- | -- |
| 381.59 | 0.91 | 4.11 | -0.688 | 1.69 | -2.1 | -- | 9.24 | 7.05 | 1.66 | 27.33 | 2979 | -- | -- |
| 409.48 | 0.942 | 4.28 | -1.53 | 1.58 | -2.56 | -- | -- | 7.03 | 1.96 | 20.01 | 21749 | -- | -- |
| 539.77 | 1.08 | 4.08 | -0.692 | -- | -2.04 | -- | 9.3 | 7.25 | -- | 27.3 | 1843 | -- | -- |
| 473.79 | 1.02 | 4.52 | -4.1 | 1.54 | -- | -2.45 | -- | 6.06 | 1.73 | -- | -- | -- | -- |
| 497.09 | 1.04 | 4.51 | -4.02 | 1.54 | -- | -- | -- | 6.07 | 1.95 | -- | -- | -- | -- |
| 558.77 | 1.1 | 4.28 | -1.62 | -- | -2.54 | -- | -- | 7.03 | -- | 19.8 | 18958 | -- | -- |
| 431.14 | 0.967 | 4.21 | -- | 1.6 | -3.49 | -- | -- | 7.36 | 1.92 | 18.58 | 47520 | -- | -- |
| 640.76 | 1.18 | 4.49 | -3.95 | -- | -- | -- | -- | 6.11 | -- | -- | -- | -- | -- |
| 922.67 | 1.42 | 4.4 | -- | 1.47 | -- | -- | -- | 6.52 | 1.88 | -- | -- | -- | -- |
| 585.24 | 1.13 | 4.2 | -- | -- | -3.43 | -- | -- | 7.37 | -- | 18.48 | 47520 | -- | -- |
| 1053.26 | 1.51 | 4.39 | -- | -- | -- | -- | -- | 6.54 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 360.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 3 | 360.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 6 |
| 22 | 364.55 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 47 | 367.23 | temperature | 25 | 4320 | > th | dose dependent | sin | 13 | NA |
| 63 | 368.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 90 | 370.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 93 | 370.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 99 | 370.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 104 | 370.68 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 129 | 371.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 245 | 372.94 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 381 | 376.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 18 |
| 411 | 377.69 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 487 | 379.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 548 | 380.68 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 552 | 380.75 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 556 | 380.79 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 565 | 380.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 593 | 381.33 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 622 | 381.60 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 627 | 381.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 634 | 381.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 712 | 382.45 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 713 | 382.45 | temperature | 20 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 738 | 382.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 747 | 382.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 749 | 382.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 750 | 382.89 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 759 | 382.92 | temperature | 20 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 762 | 382.93 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 763 | 382.95 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 772 | 383.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 776 | 383.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 6 |
| 788 | 383.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 793 | 383.15 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 828 | 383.44 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 846 | 383.60 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 859 | 383.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 883 | 383.90 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 902 | 384.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 972 | 384.37 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 975 | 384.40 | temperature | 25 | 4320 | < th | dose independent | sin | 14 | NA |