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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0600500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0246) R2 : 0.113
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.394 (0.0517) R2dN8 : 0.146 R2N8 : 0.113
σ : 0.463
deviance : 98.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
91.79 0.45 3.34 0.0436 0.234 -0.21 -0.133 1.9 0.395 7.68 1.125 42 -- --
93.74 0.451 3.32 0.107 0.215 -0.103 -0.114 -- 0.411 7.95 2 51 -- --
91.84 0.446 3.34 0.041 0.235 -0.206 -- 1.9 0.395 7.62 1.114 41 -- --
93.78 0.451 3.32 0.115 0.211 -0.104 -- -- 0.406 7.88 1.964 49 -- --
94.36 0.452 3.35 0.0101 -- -0.286 -- 1.86 0.391 -- 1.272 45 -- --
94.14 0.455 3.32 0.136 0.26 -- -0.163 -- 0.404 7.27 -- -- -- --
94.21 0.455 3.32 0.133 0.26 -- -- -- 0.405 7.32 -- -- -- --
95.13 0.454 3.32 0.072 -- -0.195 -- -- 0.416 -- 2.7 110 -- --
93.98 0.452 3.32 -- 0.211 -0.114 -- -- 0.398 8.44 1.921 49 -- --
97.8 0.462 3.32 0.137 -- -- -- -- 0.409 -- -- -- -- --
94.68 0.455 3.32 -- 0.261 -- -- -- 0.39 7.29 -- -- -- --
93.41 0.45 3.33 -- -- -0.318 -- -- 0.397 -- 3.5 378 -- --
98.3 0.463 3.33 -- -- -- -- -- 0.394 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.08 wind 1.0 30 < th dose independent rect. 2 2
2 85.14 wind 1.0 30 < th dose dependent rect. 2 2
5 86.55 radiation 1.0 43200 < th dose dependent rect. 3 1
7 86.70 atmosphere 1005.0 90 > th dose dependent rect. 2 1
12 87.15 temperature 25.0 90 > th dose dependent rect. 1 1
14 87.19 radiation 1.0 4320 < th dose dependent rect. 3 1
17 87.24 atmosphere 1000.0 30 > th dose independent rect. 3 23
19 87.25 wind 9.0 1440 < th dose independent rect. 3 1
20 87.25 temperature 10.0 1440 > th dose independent rect. 3 1
23 87.25 temperature 30.0 1440 < th dose independent rect. 3 1
27 87.25 humidity 50.0 1440 > th dose independent rect. 3 1
36 87.25 atmosphere 995.0 1440 > th dose independent rect. 3 1
37 87.25 radiation 1.0 1440 < th dose independent rect. 3 1
57 87.25 temperature 10.0 1440 > th dose independent rect. 4 23
74 87.33 temperature 25.0 90 > th dose independent rect. 1 1
77 87.36 atmosphere 1005.0 30 > th dose independent rect. 2 1
99 87.52 temperature 10.0 30 > th dose dependent rect. 2 1
101 87.53 temperature 25.0 30 < th dose independent rect. 2 1
104 87.54 temperature 10.0 30 > th dose independent rect. 2 1
107 87.54 humidity 50.0 30 > th dose independent rect. 2 1
111 87.54 atmosphere 1010.0 30 < th dose independent rect. 2 1
113 87.54 radiation 1.0 30 < th dose independent rect. 2 1
118 87.54 precipitation 0.1 30 < th dose independent rect. 2 1
119 87.54 temperature 10.0 30 > th dose independent rect. 3 23
120 87.54 radiation 1.0 30 < th dose dependent rect. 2 1
125 87.54 precipitation 0.1 30 < th dose dependent rect. 2 1
126 87.57 humidity 50.0 30 > th dose dependent rect. 2 1
131 87.61 temperature 30.0 30 < th dose dependent rect. 2 1
134 87.65 wind 1.0 30 > th dose independent rect. 2 1
142 87.69 atmosphere 1015.0 30 < th dose dependent rect. 2 1
189 87.98 precipitation 0.1 30 < th dose independent rect. 3 23
191 87.98 precipitation 0.1 30 < th dose dependent rect. 3 23
212 88.36 wind 1.0 30 < th dose dependent rect. 17 11
215 88.39 wind 1.0 30 < th dose dependent rect. 22 6
221 88.40 wind 1.0 30 < th dose dependent rect. 10 18
248 88.44 wind 1.0 30 < th dose dependent rect. 13 15
252 88.57 humidity 50.0 30 > th dose independent rect. 3 23
253 88.60 wind 1.0 30 < th dose dependent rect. 8 20
260 88.74 wind 9.0 30 < th dose independent rect. 3 23
273 88.97 wind 1.0 30 < th dose independent rect. 17 11
279 88.99 wind 1.0 30 < th dose independent rect. 21 7
292 89.09 wind 1.0 30 < th dose independent rect. 10 18
294 89.10 wind 1.0 30 < th dose independent rect. 2 10
302 89.19 wind 1.0 30 < th dose independent rect. 13 15
310 89.23 wind 9.0 90 < th dose independent rect. 13 14
314 89.27 temperature 10.0 90 > th dose independent rect. 3 10
315 89.27 atmosphere 995.0 90 > th dose independent rect. 3 10
316 89.27 atmosphere 1015.0 90 < th dose independent rect. 3 10
317 89.27 temperature 10.0 90 > th dose independent rect. 13 14
327 89.30 wind 1.0 30 < th dose dependent rect. 2 10
335 89.40 precipitation 0.1 90 < th dose independent rect. 3 10
336 89.40 precipitation 0.1 90 < th dose dependent rect. 3 10
338 89.42 wind 9.0 90 < th dose independent rect. 3 10
382 89.72 radiation 40.0 90 < th dose independent rect. 13 14
391 89.76 precipitation 0.1 90 < th dose independent rect. 13 14
393 89.76 precipitation 0.1 90 < th dose dependent rect. 13 14
399 89.80 humidity 90.0 90 < th dose independent rect. 2 1
401 89.82 temperature 25.0 10 > th dose independent rect. 16 18
411 89.87 atmosphere 1015.0 90 < th dose independent rect. 13 14
439 89.92 radiation 10.0 10 < th dose dependent rect. 4 22
451 89.99 temperature 25.0 270 > th dose independent rect. 23 3
462 90.04 wind 1.0 90 > th dose independent rect. 3 23
493 90.14 humidity 90.0 90 < th dose independent rect. 1 3
530 90.22 wind 9.0 10 < th dose dependent rect. 14 14
564 90.27 humidity 50.0 90 > th dose independent rect. 3 10
580 90.34 wind 9.0 90 < th dose dependent rect. 13 14
592 90.37 temperature 25.0 270 > th dose dependent rect. 23 4
609 90.42 temperature 25.0 10 > th dose independent rect. 16 15
623 90.44 radiation 10.0 30 < th dose independent rect. 3 23
632 90.46 wind 1.0 30 < th dose independent rect. 24 12
637 90.47 wind 1.0 30 > th dose independent sin 5 NA
654 90.49 atmosphere 1015.0 30 < th dose independent rect. 3 23
782 90.67 temperature 25.0 90 > th dose dependent rect. 17 16
783 90.67 radiation 10.0 10 < th dose dependent rect. 4 20
791 90.69 humidity 50.0 90 > th dose dependent rect. 3 10
839 90.78 humidity 90.0 10 > th dose independent rect. 24 3
861 90.79 wind 9.0 10 < th dose dependent rect. 7 21
864 90.80 wind 3.0 1440 > th dose independent rect. 7 1
950 90.87 humidity 50.0 10 > th dose dependent rect. 4 9
968 90.89 wind 3.0 1440 < th dose independent rect. 7 1
992 90.91 precipitation 0.1 10 < th dose independent rect. 14 14
995 90.91 precipitation 0.1 10 < th dose dependent rect. 14 14
998 90.92 humidity 50.0 90 > th dose independent rect. 13 14