Os12g0140200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os12g0140200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.37 | 0.53 | 7.99 | 0.151 | 2.67 | 0.692 | -0.592 | -1.77 | 0.252 | 6.6 | 15.32 | 1242 | -- | -- |
| 133.5 | 0.538 | 7.99 | 0.287 | 2.68 | 0.68 | -0.26 | -- | 0.263 | 6.62 | 14.8 | 1238 | -- | -- |
| 128.21 | 0.527 | 7.99 | 0.159 | 2.67 | 0.696 | -- | -1.64 | 0.259 | 6.62 | 15.32 | 1236 | -- | -- |
| 133.38 | 0.538 | 7.97 | 0.277 | 2.69 | 0.652 | -- | -- | 0.305 | 6.63 | 14.89 | 1236 | -- | -- |
| 471.94 | 1.01 | 8.03 | 0.337 | -- | 0.537 | -- | -1.35 | 0.372 | -- | 25.49 | 1389 | -- | -- |
| 144.93 | 0.564 | 7.93 | 0.466 | 2.57 | -- | -0.425 | -- | 0.489 | 6.35 | -- | -- | -- | -- |
| 145.37 | 0.565 | 7.93 | 0.461 | 2.57 | -- | -- | -- | 0.49 | 6.36 | -- | -- | -- | -- |
| 477.15 | 1.02 | 8.03 | 0.419 | -- | 0.529 | -- | -- | 0.399 | -- | 23.65 | 1420 | -- | -- |
| 136.01 | 0.543 | 7.97 | -- | 2.69 | 0.713 | -- | -- | 0.301 | 6.65 | 14.05 | 1209 | -- | -- |
| 487.79 | 1.03 | 7.98 | 0.528 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 150.97 | 0.575 | 7.94 | -- | 2.57 | -- | -- | -- | 0.439 | 6.35 | -- | -- | -- | -- |
| 480.45 | 1.02 | 8.03 | -- | -- | 0.556 | -- | -- | 0.349 | -- | 20.24 | 1428 | -- | -- |
| 495.15 | 1.04 | 7.99 | -- | -- | -- | -- | -- | 0.486 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.92 | wind | 1 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 2 | 118.06 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 3 | 118.16 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 11 | 120.70 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 12 | 120.85 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 19 | 121.53 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 30 | 122.45 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 33 | 122.68 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 38 | 122.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 51 | 123.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 64 | 123.66 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 15 |
| 66 | 123.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 67 | 123.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 12 |
| 79 | 124.01 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 101 | 124.36 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 122 | 124.63 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 136 | 124.80 | wind | 3 | 14400 | < th | dose dependent | sin | 3 | NA |
| 143 | 124.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 144 | 124.86 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 149 | 124.90 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 173 | 124.94 | wind | 1 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 186 | 125.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 212 | 125.20 | radiation | 10 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 226 | 125.29 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 260 | 125.46 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 22 |
| 270 | 125.53 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 20 |
| 323 | 125.64 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 401 | 125.83 | radiation | 30 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 482 | 125.97 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 578 | 126.16 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 593 | 126.20 | radiation | 30 | 43200 | < th | dose dependent | rect. | 11 | 6 |
| 604 | 126.22 | radiation | 30 | 43200 | < th | dose dependent | rect. | 10 | 11 |
| 628 | 126.27 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 743 | 126.38 | radiation | 10 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 767 | 126.40 | radiation | 20 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 783 | 126.41 | radiation | 30 | 43200 | < th | dose dependent | sin | 18 | NA |
| 819 | 126.45 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 895 | 126.53 | humidity | 60 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 909 | 126.56 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 10 |
| 995 | 126.64 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |