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Os04g0492800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calmodulin (CaM).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0312) R2 : 0.366
β1 : -0.96 (0.114) R2dD : 0.102 R2D : 0.0529
β2 : 1.08 (0.081) R2dC : 0.247 R2C : 0.215
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.436 (0.0667) R2dN8 : 0.0794 R2N8 : 0.0243
σ : 0.588
deviance : 157.43
__
_____
C
peak time of C : 4.94
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.89 0.538 10.5 -0.917 0.912 -1.13 0.613 -2.68 -0.378 7.32 0.9815 120 -- --
144.04 0.559 10.5 -1.02 0.89 -0.743 1.1 -- -0.398 5.8 5.738 122 -- --
131.75 0.535 10.5 -0.906 0.914 -1.17 -- -2.52 -0.377 7.51 0.1401 121 -- --
144.98 0.561 10.5 -0.947 0.915 -0.998 -- -- -0.388 7.06 1.358 122 -- --
160.59 0.59 10.5 -0.952 -- -1.14 -- -2.43 -0.358 -- -1.372 320 -- --
150.48 0.575 10.5 -0.951 1.05 -- 1.69 -- -0.427 4.55 -- -- -- --
157.43 0.588 10.5 -0.96 1.08 -- -- -- -0.436 4.94 -- -- -- --
170.12 0.607 10.5 -0.888 -- -1.17 -- -- -0.325 -- -0.000376 406 -- --
168.78 0.605 10.5 -- 0.9 -1.02 -- -- -0.279 7.21 0.8401 126 -- --
218.49 0.691 10.6 -0.921 -- -- -- -- -0.408 -- -- -- -- --
181.74 0.631 10.5 -- 1.06 -- -- -- -0.329 4.97 -- -- -- --
190.94 0.644 10.5 -- -- -1.19 -- -- -0.227 -- -6.36 408 -- --
240.86 0.724 10.5 -- -- -- -- -- -0.306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.08 temperature 10.0 270 > th dose dependent rect. 6 9
18 120.89 temperature 15.0 90 > th dose dependent rect. 9 7
40 122.44 temperature 25.0 270 < th dose independent rect. 2 9
58 123.43 wind 7.0 270 < th dose independent rect. 6 9
90 124.45 atmosphere 1000.0 30 > th dose independent rect. 4 16
101 124.89 temperature 25.0 270 > th dose independent rect. 7 7
104 125.01 radiation 40.0 270 < th dose dependent rect. 2 16
106 125.12 radiation 40.0 270 < th dose independent rect. 2 17
119 125.47 temperature 20.0 270 > th dose independent rect. 6 9
127 125.73 temperature 25.0 270 < th dose independent rect. 2 16
129 125.73 atmosphere 995.0 30 > th dose dependent rect. 4 16
149 126.38 atmosphere 1000.0 30 > th dose independent rect. 4 19
154 126.47 radiation 40.0 270 < th dose dependent rect. 1 9
162 126.60 temperature 10.0 90 > th dose dependent rect. 9 17
173 126.77 radiation 40.0 270 < th dose independent rect. 1 10
175 126.83 precipitation 0.1 270 < th dose independent rect. 6 9
176 126.83 precipitation 0.1 270 < th dose dependent rect. 6 9
189 126.96 wind 7.0 270 < th dose independent rect. 15 15
194 127.00 humidity 50.0 270 > th dose dependent rect. 19 7
196 127.03 radiation 30.0 270 < th dose independent rect. 15 15
202 127.12 atmosphere 1015.0 270 < th dose independent rect. 6 9
203 127.12 temperature 10.0 270 > th dose independent rect. 15 15
210 127.27 temperature 25.0 10 > th dose independent rect. 9 8
212 127.27 temperature 30.0 30 < th dose dependent rect. 4 16
224 127.43 radiation 40.0 90 < th dose dependent rect. 16 17
232 127.56 atmosphere 995.0 270 > th dose independent rect. 6 9
234 127.56 atmosphere 995.0 270 > th dose dependent rect. 1 8
237 127.60 atmosphere 1005.0 270 > th dose independent rect. 1 8
245 127.67 radiation 1.0 270 > th dose independent rect. 6 9
251 127.73 wind 7.0 90 < th dose independent rect. 9 8
252 127.74 radiation 40.0 90 < th dose dependent rect. 15 20
253 127.75 radiation 20.0 270 < th dose independent rect. 2 17
254 127.76 radiation 20.0 90 < th dose independent rect. 17 16
255 127.77 humidity 90.0 270 < th dose independent rect. 7 8
256 127.78 precipitation 0.1 270 < th dose independent rect. 19 7
257 127.78 precipitation 0.1 270 < th dose dependent rect. 19 7
263 127.83 radiation 20.0 270 < th dose independent rect. 1 9
280 128.03 temperature 15.0 270 > th dose independent rect. 19 7
288 128.07 temperature 30.0 270 < th dose independent rect. 19 7
289 128.07 humidity 50.0 270 > th dose independent rect. 19 7
291 128.07 atmosphere 995.0 270 > th dose independent rect. 19 7
292 128.07 radiation 1.0 270 < th dose independent rect. 19 7
297 128.07 temperature 10.0 270 > th dose independent rect. 2 17
298 128.07 atmosphere 1015.0 270 < th dose independent rect. 2 17
300 128.07 radiation 1.0 270 < th dose dependent rect. 19 7
314 128.15 wind 9.0 270 < th dose independent rect. 19 7
316 128.20 humidity 50.0 30 > th dose dependent rect. 20 8
330 128.27 atmosphere 995.0 270 > th dose independent rect. 15 15
355 128.46 humidity 90.0 90 < th dose independent rect. 9 8
367 128.52 humidity 50.0 270 > th dose independent rect. 9 16
374 128.57 temperature 10.0 270 > th dose dependent rect. 20 18
384 128.62 atmosphere 995.0 10 > th dose dependent rect. 4 19
386 128.64 wind 9.0 270 < th dose independent rect. 9 16
396 128.69 precipitation 0.1 270 < th dose independent rect. 2 17
398 128.69 precipitation 0.1 270 < th dose dependent rect. 2 17
401 128.70 temperature 30.0 30 < th dose dependent rect. 4 8
412 128.75 radiation 40.0 90 < th dose dependent rect. 13 22
428 128.83 precipitation 0.1 270 < th dose independent rect. 9 16
431 128.83 precipitation 0.1 270 < th dose dependent rect. 9 16
433 128.84 temperature 15.0 30 > th dose independent rect. 20 8
437 128.85 humidity 50.0 270 > th dose independent rect. 6 9
487 128.90 radiation 1.0 30 < th dose dependent rect. 20 8
491 128.91 temperature 30.0 30 < th dose independent rect. 20 8
492 128.91 humidity 50.0 30 > th dose independent rect. 20 8
495 128.91 atmosphere 995.0 30 > th dose independent rect. 20 8
496 128.91 radiation 1.0 30 < th dose independent rect. 20 8
501 128.91 temperature 10.0 30 > th dose independent rect. 4 16
503 128.91 atmosphere 1015.0 30 < th dose independent rect. 4 16
511 128.92 wind 9.0 30 < th dose independent rect. 20 8
513 128.92 temperature 10.0 10 > th dose dependent rect. 9 19
535 129.04 precipitation 0.1 30 < th dose independent rect. 20 8
538 129.04 precipitation 0.1 30 < th dose dependent rect. 20 8
558 129.12 temperature 30.0 10 < th dose independent rect. 4 8
561 129.13 radiation 40.0 90 < th dose independent rect. 3 8
563 129.15 precipitation 0.1 270 < th dose independent rect. 1 8
566 129.15 precipitation 0.1 270 < th dose dependent rect. 1 8
568 129.17 temperature 15.0 270 > th dose independent rect. 9 16
577 129.21 precipitation 0.1 270 < th dose independent rect. 15 15
579 129.21 precipitation 0.1 270 < th dose dependent rect. 15 15
625 129.33 radiation 20.0 90 < th dose independent rect. 4 16
626 129.33 temperature 10.0 270 > th dose dependent rect. 7 17
641 129.39 temperature 25.0 270 < th dose independent sin 4 NA
659 129.46 radiation 20.0 270 < th dose dependent sin 4 NA
663 129.47 atmosphere 1015.0 30 < th dose dependent rect. 20 8
674 129.52 atmosphere 995.0 90 > th dose independent rect. 17 16
691 129.57 wind 9.0 270 < th dose independent rect. 2 17
711 129.65 wind 7.0 270 < th dose independent rect. 1 8
712 129.65 precipitation 0.1 90 < th dose independent rect. 9 8
715 129.65 precipitation 0.1 90 < th dose dependent rect. 9 8
746 129.69 radiation 1.0 90 > th dose independent rect. 9 8
781 129.74 atmosphere 1015.0 90 < th dose independent rect. 9 8
786 129.74 temperature 10.0 90 > th dose independent rect. 17 16
803 129.79 temperature 10.0 270 > th dose independent rect. 1 8
805 129.79 humidity 50.0 270 > th dose independent rect. 1 8
806 129.79 atmosphere 995.0 270 > th dose independent rect. 1 8
807 129.79 atmosphere 1015.0 270 < th dose independent rect. 1 8
817 129.83 atmosphere 1005.0 10 > th dose independent rect. 4 6
818 129.84 wind 1.0 270 > th dose independent rect. 7 8
833 129.89 atmosphere 995.0 90 > th dose independent rect. 17 14
880 129.99 wind 1.0 270 > th dose independent rect. 2 17
889 129.99 wind 9.0 30 < th dose dependent rect. 20 8
907 130.05 wind 9.0 90 < th dose independent rect. 17 16
911 130.07 atmosphere 1015.0 270 < th dose independent rect. 19 7
914 130.07 humidity 50.0 270 > th dose dependent rect. 1 8
918 130.08 wind 9.0 270 < th dose dependent rect. 7 8
922 130.09 precipitation 0.1 10 < th dose independent rect. 4 16
923 130.09 precipitation 0.1 10 < th dose dependent rect. 4 16
941 130.14 temperature 25.0 10 > th dose dependent rect. 2 14
946 130.16 atmosphere 995.0 10 > th dose dependent rect. 4 8
949 130.17 temperature 25.0 270 > th dose independent rect. 9 2
957 130.18 atmosphere 1000.0 10 > th dose dependent rect. 4 6