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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0812400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.63 (0.0577) R2 : 0.376
β1 : 2.42 (0.216) R2dD : 0.188 R2D : 0.167
β2 : 0.633 (0.135) R2dC : 0.033 R2C : 0.0174
β3 : -0.252 (0.21) R2dE : 0.00233 R2E : -0.0141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.9 (0.894) R2dD*E : 0.0711 R2D*E : 0.102
γ1 : 0.948 (0.122) R2dN8 : 0.106 R2N8 : 0.043
σ : 1.06
deviance : 516.28
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_____
C
peak time of C : 0.319
E
wheather : radiation
threshold : 34.48
memory length : 1400
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.08
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
501.12 1.05 5.63 2.47 0.664 -0.32 2.06 -6.2 0.923 23.4 34.36 1273 4.95 --
544.09 1.09 5.57 2.68 0.672 -0.836 2.19 -- 1.03 23.1 30.39 2150 5.56 --
516.28 1.06 5.63 2.42 0.633 -0.252 -- -5.9 0.948 0.319 34.48 1400 5.08 --
551.26 1.09 5.52 2.75 0.752 -0.847 -- -- 1.26 0.059 30.75 2431 7.49 --
542.07 1.08 5.63 2.4 -- -0.176 -- -5.9 0.912 -- 34.48 1479 4.91 --
563.99 1.11 5.56 2.72 0.582 -- 1.84 -- 1.02 23.5 -- -- -- --
576.82 1.12 5.56 2.64 0.598 -- -- -- 1 0.657 -- -- -- --
576.87 1.12 5.55 2.64 -- 0.593 -- -- 1.01 -- -3.624e-06 4318 5.58 --
702.81 1.23 5.58 -- 0.952 -1.22 -- -- 1.05 0.0758 29.93 6949 8.27 --
599.22 1.14 5.55 2.66 -- -- -- -- 1.02 -- -- -- -- --
760.5 1.29 5.62 -- 0.639 -- -- -- 0.711 0.853 -- -- -- --
636.64 1.18 5.87 -- -- -1.77 -- -- 0.0494 -- 59.99 47520 6.55 --
786.03 1.31 5.61 -- -- -- -- -- 0.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 497.47 wind 1.0 4320 > th dose independent rect. 9 2
2 497.74 wind 1.0 4320 < th dose independent rect. 9 2
5 503.37 wind 1.0 4320 < th dose dependent rect. 9 2
9 505.49 radiation 30.0 1440 > th dose independent rect. 7 3
25 505.85 radiation 30.0 1440 > th dose independent rect. 15 20
45 507.30 radiation 30.0 1440 > th dose independent sin 11 NA
49 508.74 radiation 30.0 1440 < th dose independent rect. 7 3
50 508.90 radiation 30.0 1440 < th dose independent rect. 1 9
51 508.91 radiation 30.0 1440 < th dose independent rect. 3 7
55 508.95 radiation 30.0 1440 < th dose independent rect. 17 17
58 509.03 radiation 30.0 1440 < th dose independent rect. 22 12
61 509.04 radiation 30.0 1440 < th dose independent rect. 20 14
64 509.20 radiation 30.0 1440 > th dose dependent rect. 7 4
135 511.05 wind 1.0 4320 < th dose dependent rect. 18 1
137 511.15 radiation 30.0 1440 > th dose dependent sin 11 NA
157 511.77 humidity 70.0 14400 > th dose dependent rect. 21 1
159 511.89 wind 1.0 4320 < th dose independent rect. 18 1
162 512.13 radiation 30.0 1440 < th dose independent sin 11 NA
251 513.33 humidity 70.0 14400 < th dose dependent rect. 16 19
253 513.45 wind 1.0 4320 > th dose independent rect. 18 1
254 513.55 wind 1.0 4320 > th dose independent rect. 9 10
267 514.15 precipitation 0.1 14400 > th dose dependent rect. 2 16
270 514.42 humidity 70.0 14400 < th dose independent rect. 17 16
272 514.43 humidity 70.0 14400 < th dose dependent sin 11 NA
273 514.47 humidity 90.0 14400 < th dose dependent rect. 21 2
290 514.56 humidity 80.0 43200 < th dose independent rect. 18 2
318 515.76 humidity 70.0 14400 > th dose independent rect. 17 16
324 515.88 wind 1.0 4320 > th dose independent rect. 9 14
329 515.93 humidity 50.0 14400 > th dose independent sin 11 NA
330 515.93 humidity 50.0 14400 > th dose independent rect. 15 20
334 516.12 humidity 50.0 14400 > th dose independent rect. 15 2
358 516.36 wind 1.0 4320 > th dose independent rect. 13 2
360 516.38 wind 1.0 4320 < th dose independent rect. 9 10
381 516.47 humidity 80.0 43200 > th dose independent rect. 17 4
394 516.76 humidity 60.0 14400 > th dose independent rect. 17 20
398 516.82 humidity 70.0 14400 > th dose independent rect. 17 1
454 517.29 humidity 50.0 14400 < th dose independent sin 11 NA
460 517.33 humidity 70.0 14400 < th dose dependent rect. 10 1
463 517.36 humidity 60.0 14400 < th dose independent rect. 17 20
469 517.45 humidity 70.0 43200 > th dose dependent rect. 18 2
476 517.54 humidity 70.0 43200 > th dose dependent rect. 6 6
505 517.77 humidity 70.0 14400 > th dose independent rect. 17 12
509 517.79 humidity 70.0 14400 > th dose independent rect. 17 8
513 517.81 humidity 70.0 14400 > th dose independent rect. 17 6
549 518.02 radiation 40.0 720 < th dose independent rect. 2 15
555 518.05 humidity 70.0 14400 < th dose independent rect. 17 5
571 518.13 precipitation 0.1 43200 > th dose dependent rect. 17 3
597 518.21 humidity 70.0 14400 < th dose dependent rect. 16 6
616 518.29 wind 3.0 1440 < th dose dependent rect. 9 14
625 518.41 humidity 60.0 14400 > th dose independent rect. 9 4
626 518.42 wind 3.0 1440 < th dose dependent rect. 13 10
628 518.43 wind 1.0 4320 < th dose independent rect. 13 3
632 518.45 humidity 50.0 14400 > th dose independent rect. 15 4
635 518.48 humidity 50.0 14400 > th dose independent rect. 15 14
637 518.50 humidity 50.0 14400 > th dose independent rect. 15 17
647 518.54 humidity 70.0 14400 < th dose dependent rect. 16 2
650 518.55 radiation 40.0 1440 < th dose dependent rect. 8 2
654 518.56 humidity 70.0 43200 > th dose dependent rect. 7 4
661 518.57 wind 9.0 43200 > th dose independent rect. 15 20
663 518.58 humidity 50.0 14400 > th dose independent rect. 15 10
665 518.58 humidity 60.0 14400 > th dose independent rect. 20 17
681 518.63 radiation 40.0 720 < th dose independent rect. 5 20
689 518.66 humidity 60.0 14400 > th dose independent rect. 24 13
692 518.67 humidity 60.0 14400 > th dose independent rect. 2 11
696 518.68 humidity 60.0 14400 > th dose independent rect. 6 7
697 518.68 humidity 60.0 14400 > th dose independent rect. 4 9
701 518.68 wind 9.0 43200 > th dose dependent rect. 15 18
713 518.81 precipitation 0.1 14400 > th dose dependent rect. 4 23
715 518.83 precipitation 0.1 14400 > th dose dependent sin 1 NA
718 518.86 precipitation 0.1 14400 > th dose dependent rect. 17 18
752 519.02 humidity 70.0 14400 < th dose independent sin 11 NA
764 519.09 wind 9.0 43200 < th dose independent rect. 16 18
774 519.14 wind 1.0 1440 < th dose independent rect. 8 15
781 519.18 humidity 60.0 14400 < th dose independent rect. 10 3
788 519.24 humidity 90.0 14400 < th dose dependent rect. 22 6
810 519.33 wind 1.0 4320 > th dose independent sin 20 NA
822 519.39 humidity 60.0 14400 > th dose independent rect. 10 2
839 519.48 radiation 40.0 720 < th dose independent rect. 3 20
862 519.55 precipitation 0.1 14400 > th dose dependent rect. 8 11
868 519.57 radiation 40.0 720 < th dose independent rect. 5 10
871 519.59 radiation 40.0 720 < th dose independent rect. 5 12
883 519.66 humidity 50.0 14400 > th dose dependent rect. 20 9
893 519.72 radiation 10.0 43200 < th dose dependent rect. 7 4
900 519.75 humidity 50.0 14400 < th dose independent rect. 15 2
901 519.75 humidity 70.0 14400 < th dose dependent no NA NA
902 519.75 humidity 70.0 14400 < th dose dependent rect. 6 16
971 519.78 precipitation 0.1 43200 > th dose dependent rect. 19 2
991 519.82 humidity 70.0 14400 < th dose dependent rect. 20 23