BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0812400 Os03g0812400|AK119951
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0812400 EF-Hand type domain containing protein 259 1e-69
Os03g0812800 127 8e-30
Os03g0813500 115 2e-26
Os07g0223900 100 6e-22
Os11g0143800 79 2e-15
Os12g0140000 74 8e-14
Os12g0140200 Zinc finger, RING-type domain containing protein 73 2e-13
Os12g0228800 Similar to Calmodulin-like protein 69 2e-12
Os05g0312600 EF-Hand type domain containing protein 69 2e-12
Os09g0412300 Calcium-binding EF-hand domain containing protein 68 4e-12
Os04g0492800 Similar to Calmodulin (CaM) 65 4e-11
>Os03g0812400 EF-Hand type domain containing protein
Length = 213
Score = 259 bits (661), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/213 (66%), Positives = 142/213 (66%)
Query: 1 MSQFVATFEYCSLAVSVSSLLIRFVLHPLVRDAIILVMXXXXXXXXXXXXXXXXXHDDSA 60
MSQFVATFEYCSLAVSVSSLLIRFVLHPLVRDAIILVM HDDSA
Sbjct: 1 MSQFVATFEYCSLAVSVSSLLIRFVLHPLVRDAIILVMSRAGASSLSCALLGLLAHDDSA 60
Query: 61 LFAADDRCAGXXXXXXXXXXXXXXXXXXARRGGAGLSRHDVAAVVASLGMXXXXXXXXXX 120
LFAADDRCAG ARRGGAGLSRHDVAAVVASLGM
Sbjct: 61 LFAADDRCAGAVAVVEPPPPLRRECELCARRGGAGLSRHDVAAVVASLGMVAAGEDDDDD 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXLREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGA 180
LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGA
Sbjct: 121 DEACGVCEAVAAVEEMAEGKVAGEGELREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGA 180
Query: 181 RYGDCVRMIAAYDGDGDGRISFQEFRAMMENAV 213
RYGDCVRMIAAYDGDGDGRISFQEFRAMMENAV
Sbjct: 181 RYGDCVRMIAAYDGDGDGRISFQEFRAMMENAV 213
>Os03g0812800
Length = 200
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 72/119 (60%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Query: 96 LSRHDVAAVVASLGMXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXLREAFYV 153
LSRHDVAAVVASLG+ LREAF V
Sbjct: 81 LSRHDVAAVVASLGLVAADEDDEEGDHQAPCGACEAVAAVEKLAESKVAGEGELREAFRV 140
Query: 154 FDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFRAMMENA 212
FDRD DGYVSAAEL +V+RRLG+EEGAR+GDCVRMIAA+DGDGDGRISFQEFRAMMENA
Sbjct: 141 FDRDGDGYVSAAELRSVLRRLGMEEGARHGDCVRMIAAHDGDGDGRISFQEFRAMMENA 199
>Os03g0813500
Length = 207
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Query: 96 LSRHDVAAVVASLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLREA---FY 152
LSRHDV AVVASLG+ LR A
Sbjct: 88 LSRHDVTAVVASLGLVAADEDDEEGDHQEPCGACEEVAELAESKMAGEGE-LRPAGGVPR 146
Query: 153 VFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFRAMMENA 212
VFDRD DGYVSAAEL +V+RRLG+EEGAR+GDCVRMIAA+DGDGDGRISFQEFRAMMENA
Sbjct: 147 VFDRDGDGYVSAAELRSVLRRLGMEEGARHGDCVRMIAAHDGDGDGRISFQEFRAMMENA 206
>Os07g0223900
Length = 192
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 56/66 (84%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
L++AFYVFDR+EDG++ A+ELW+VMRRLG +EG RY DC+RMI +D D DGRIS+ EFR
Sbjct: 121 LKDAFYVFDRNEDGFICASELWSVMRRLGFKEGQRYEDCMRMIHTFDEDRDGRISYLEFR 180
Query: 207 AMMENA 212
MME+A
Sbjct: 181 RMMEDA 186
>Os11g0143800
Length = 146
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
L EAF VFD D DG++S EL NVMRRLG++ A + +C RM+ +D DGDG I+F EF+
Sbjct: 80 LEEAFSVFDGDGDGFISPLELQNVMRRLGLQHDAGHEECERMLKVFDRDGDGMINFDEFK 139
Query: 207 AMMENAV 213
MM+ V
Sbjct: 140 VMMQGVV 146
>Os12g0140000
Length = 98
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 47/67 (70%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
L EAF VFD D DG++S EL +VMRRLG++ A + +C RM+ +D DGDG I+F EF+
Sbjct: 32 LEEAFSVFDGDGDGFISPLELQSVMRRLGLQHDAGHEECERMLKVFDRDGDGMINFDEFK 91
Query: 207 AMMENAV 213
MM+ +
Sbjct: 92 VMMQGVI 98
>Os12g0140200 Zinc finger, RING-type domain containing protein
Length = 328
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
L EAF VFD D DG++S EL NVMRRL ++ A + +C RM+ +D DGDG I+F EF+
Sbjct: 253 LEEAFSVFDGDGDGFISPLELQNVMRRLCLQRDAGHEECERMLKVFDRDGDGMINFDEFK 312
Query: 207 AMME 210
MM+
Sbjct: 313 VMMQ 316
>Os12g0228800 Similar to Calmodulin-like protein
Length = 168
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
+REAF VFD++ DG+++ EL +V+ LG++ G DC RMI+ D DGDGR+ F+EF+
Sbjct: 96 MREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFK 155
Query: 207 AMM 209
MM
Sbjct: 156 QMM 158
>Os05g0312600 EF-Hand type domain containing protein
Length = 197
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
+REAF VFD D DGY+SAAEL V+ R+G+ E A MIAA D D DGR+ ++EF+
Sbjct: 131 MREAFGVFDEDGDGYISAAELQAVLSRMGLPEAACMARVRDMIAAADRDSDGRVDYEEFK 190
Query: 207 AMM 209
AMM
Sbjct: 191 AMM 193
>Os09g0412300 Calcium-binding EF-hand domain containing protein
Length = 75
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 150 AFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFRAMM 209
AF VFDR+ DG++ A EL +V+ LG GA + +C RMI AYD D DGR+ F+EF M
Sbjct: 11 AFRVFDRNGDGFIDAGELGSVLASLGFAAGAGHAECQRMIDAYDADKDGRVDFREFLKFM 70
Query: 210 ENAV 213
E A
Sbjct: 71 ETAA 74
>Os04g0492800 Similar to Calmodulin (CaM)
Length = 250
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%)
Query: 147 LREAFYVFDRDEDGYVSAAELWNVMRRLGIEEGARYGDCVRMIAAYDGDGDGRISFQEFR 206
+REAF VFD + DGY++ EL V+ LG+++G +C RMI D DGDGR+ F EF
Sbjct: 179 MREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFL 238
Query: 207 AMM 209
MM
Sbjct: 239 QMM 241
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.139 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,754,573
Number of extensions: 136290
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 787
Number of HSP's successfully gapped: 13
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)