Os05g0312600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os05g0312600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.18 | 0.73 | 3.47 | 2.21 | 0.284 | 1.24 | 0.615 | -6.24 | 0.468 | 8.59 | 25 | 4326 | -- | -- |
| 253.95 | 0.742 | 3.62 | 1.59 | 0.291 | 1.7 | 0.505 | -- | 0.336 | 8.71 | 18.99 | 15058 | -- | -- |
| 242.01 | 0.725 | 3.47 | 2.22 | 0.297 | 1.22 | -- | -6.07 | 0.475 | 9.64 | 24.83 | 4389 | -- | -- |
| 252.97 | 0.741 | 3.62 | 1.7 | 0.304 | 1.67 | -- | -- | 0.331 | 10.2 | 18.8 | 20820 | -- | -- |
| 246.9 | 0.732 | 3.48 | 2.2 | -- | 1.23 | -- | -5.99 | 0.48 | -- | 24.9 | 4296 | -- | -- |
| 288.27 | 0.796 | 3.74 | 0.192 | 0.333 | -- | 0.361 | -- | -0.177 | 9.74 | -- | -- | -- | -- |
| 288.6 | 0.796 | 3.74 | 0.208 | 0.331 | -- | -- | -- | -0.175 | 10.4 | -- | -- | -- | -- |
| 258.49 | 0.749 | 3.63 | 1.77 | -- | 1.71 | -- | -- | 0.341 | -- | 18.7 | 21158 | -- | -- |
| 278 | 0.777 | 3.63 | -- | 0.274 | 0.853 | -- | -- | 0.232 | 10.1 | 23.52 | 10330 | -- | -- |
| 295.3 | 0.803 | 3.75 | 0.203 | -- | -- | -- | -- | -0.176 | -- | -- | -- | -- | -- |
| 289.75 | 0.796 | 3.74 | -- | 0.33 | -- | -- | -- | -0.198 | 10.3 | -- | -- | -- | -- |
| 270.03 | 0.765 | 3.71 | -- | -- | 0.777 | -- | -- | 0.0277 | -- | 22.2 | 1998 | -- | -- |
| 296.39 | 0.804 | 3.75 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 235.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 9 | 237.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 19 | 238.44 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 21 | 238.56 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 66 | 240.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 67 | 240.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 70 | 240.19 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 21 |
| 91 | 240.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 19 |
| 93 | 240.67 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 19 |
| 110 | 240.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 116 | 240.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 123 | 240.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 13 |
| 130 | 240.93 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 166 | 241.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 167 | 241.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 172 | 241.09 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 183 | 241.12 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 189 | 241.16 | temperature | 25 | 4320 | > th | dose independent | rect. | 12 | 15 |
| 196 | 241.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 200 | 241.19 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 207 | 241.20 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 212 | 241.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 23 |
| 221 | 241.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 235 | 241.30 | temperature | 20 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 241 | 241.32 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 248 | 241.33 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 274 | 241.38 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 297 | 241.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 304 | 241.45 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 366 | 241.57 | temperature | 25 | 4320 | < th | dose independent | sin | 17 | NA |
| 369 | 241.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 396 | 241.62 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 408 | 241.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 443 | 241.73 | temperature | 20 | 43200 | > th | dose dependent | sin | 1 | NA |
| 480 | 241.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 509 | 241.84 | temperature | 25 | 4320 | > th | dose independent | sin | 17 | NA |
| 532 | 241.88 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 537 | 241.90 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 683 | 242.07 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 796 | 242.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 812 | 242.21 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 818 | 242.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 825 | 242.24 | temperature | 25 | 4320 | < th | dose independent | sin | 5 | NA |
| 842 | 242.25 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 859 | 242.27 | temperature | 20 | 43200 | > th | dose dependent | rect. | 12 | 23 |
| 870 | 242.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 874 | 242.30 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 882 | 242.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 892 | 242.31 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 894 | 242.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 908 | 242.33 | temperature | 25 | 4320 | > th | dose independent | sin | 6 | NA |
| 917 | 242.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 6 |
| 919 | 242.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 947 | 242.39 | temperature | 25 | 43200 | < th | dose independent | sin | 2 | NA |
| 957 | 242.40 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |