Os09g0412300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calcium-binding EF-hand domain containing protein.
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Os09g0412300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calcium-binding EF-hand domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.09 | 0.558 | 12.4 | 0.545 | 0.994 | -0.9 | -0.317 | -0.0407 | 0.613 | 7.67 | 7.482 | 66 | -- | -- |
| 141.06 | 0.553 | 12.4 | 0.543 | 1 | -0.906 | -0.342 | -- | 0.612 | 7.69 | 7.5 | 63 | -- | -- |
| 141.31 | 0.554 | 12.4 | 0.544 | 0.982 | -0.886 | -- | -0.148 | 0.614 | 7.62 | 7.496 | 65 | -- | -- |
| 141.4 | 0.554 | 12.4 | 0.534 | 1 | -0.908 | -- | -- | 0.615 | 7.71 | 7.5 | 63 | -- | -- |
| 161.76 | 0.592 | 12.4 | 0.552 | -- | -1.11 | -- | -0.228 | 0.538 | -- | 0.8716 | 535 | -- | -- |
| 159.78 | 0.593 | 12.4 | 0.585 | 1.14 | -- | -0.115 | -- | 0.553 | 4.07 | -- | -- | -- | -- |
| 159.82 | 0.592 | 12.4 | 0.586 | 1.14 | -- | -- | -- | 0.554 | 4.07 | -- | -- | -- | -- |
| 159.73 | 0.589 | 12.4 | 0.664 | -- | -1.15 | -- | -- | 0.632 | -- | 0.4917 | 536 | -- | -- |
| 148.92 | 0.568 | 12.4 | -- | 1.01 | -0.942 | -- | -- | 0.562 | 7.82 | 7.61 | 63 | -- | -- |
| 230.67 | 0.71 | 12.4 | 0.632 | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
| 168.87 | 0.608 | 12.4 | -- | 1.15 | -- | -- | -- | 0.489 | 4.06 | -- | -- | -- | -- |
| 171.43 | 0.61 | 12.4 | -- | -- | -1.18 | -- | -- | 0.556 | -- | 1.183 | 541 | -- | -- |
| 241.22 | 0.725 | 12.4 | -- | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.58 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 2 | 130.61 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 6 | 130.98 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 10 | 131.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 11 | 131.07 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 12 | 131.08 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 23 | 131.35 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 28 | 131.64 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 32 | 131.68 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 38 | 131.82 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 45 | 132.11 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 71 | 132.84 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 76 | 132.94 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 77 | 132.96 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 83 | 133.09 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 89 | 133.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 93 | 133.30 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 94 | 133.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 96 | 133.30 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 97 | 133.30 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 100 | 133.30 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 101 | 133.30 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 106 | 133.30 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 107 | 133.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 121 | 133.53 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 136 | 133.72 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 138 | 133.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 3 |
| 139 | 133.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 142 | 133.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 143 | 133.77 | humidity | 80.0 | 30 | > th | dose dependent | sin | 2 | NA |
| 147 | 133.79 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 153 | 133.86 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 154 | 133.86 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 155 | 133.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 156 | 133.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 158 | 133.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 159 | 133.87 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 162 | 133.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 163 | 133.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 167 | 133.87 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 176 | 133.97 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 179 | 134.01 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 192 | 134.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 193 | 134.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 195 | 134.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 196 | 134.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 219 | 134.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 269 | 134.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 285 | 134.77 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 300 | 134.93 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 309 | 134.98 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 370 | 135.55 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 422 | 135.80 | radiation | 10.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 482 | 136.07 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 529 | 136.31 | humidity | 90.0 | 90 | > th | dose independent | rect. | 3 | 9 |
| 555 | 136.42 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 661 | 136.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 14 |
| 673 | 136.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 700 | 136.78 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 725 | 136.86 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 800 | 137.06 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 801 | 137.06 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 10 |
| 802 | 137.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 803 | 137.06 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 804 | 137.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 808 | 137.07 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 10 |
| 865 | 137.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 14 |
| 874 | 137.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 14 |
| 878 | 137.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 14 |
| 985 | 137.58 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 17 |