BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0411900 Os09g0411900|AK064191
(113 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0411900 Similar to NAC-domain containing protein 18 (A... 139 4e-34
Os08g0433500 No apical meristem (NAM) protein domain contai... 72 8e-14
Os04g0460600 Similar to NAM / CUC2-like protein 71 1e-13
Os02g0579000 No apical meristem (NAM) protein domain contai... 67 3e-12
Os03g0624600 No apical meristem (NAM) protein domain contai... 67 3e-12
Os09g0497900 No apical meristem (NAM) protein domain contai... 66 7e-12
Os10g0532000 Similar to GRAB2 protein 62 8e-11
>Os09g0411900 Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL
MERISTEM protein) (AtNAM)
Length = 113
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 71/90 (78%)
Query: 24 TAMISRLLPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDLLPPPRCD 83
TAMISRLLPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDLLPPPRCD
Sbjct: 24 TAMISRLLPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDLLPPPRCD 83
Query: 84 XXXXXXXXXXXRCGYFFCTXXXXXXXXPWG 113
RCGYFFCT PWG
Sbjct: 84 AAAEEEEEEEERCGYFFCTAAAAAAAAPWG 113
>Os08g0433500 No apical meristem (NAM) protein domain containing protein
Length = 334
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 31 LPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDLLPPPRCDXXXXXXX 90
LP GFRF PTD ELV +YLARKA DA FTSAAIRD DLY ++PW L CD
Sbjct: 7 LPAGFRFFPTDEELVTYYLARKAMDATFTSAAIRDVDLYTSDPWHLP----CDSSAASTG 62
Query: 91 XXXXRCGYFFC 101
YFFC
Sbjct: 63 GGGGGECYFFC 73
>Os04g0460600 Similar to NAM / CUC2-like protein
Length = 343
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 31 LPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDL 76
LPPGFRF PTD EL+ HYLA+K ADA F + A+ +ADL + EPWDL
Sbjct: 12 LPPGFRFHPTDEELITHYLAKKVADARFAALAVAEADLNKCEPWDL 57
>Os02g0579000 No apical meristem (NAM) protein domain containing protein
Length = 345
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 44/73 (60%), Gaps = 11/73 (15%)
Query: 31 LPPGFRFRPTDGELVAHYLARKAAD-AGFTSAAIRDADLYRAEPWDLLPPPRCDXXXXXX 89
LPPGFRF PTD EL+ HYL RKAAD AGF + A+ +ADL + EPWDL P R
Sbjct: 37 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDL--PSRA------- 87
Query: 90 XXXXXRCGYFFCT 102
+ YFFC
Sbjct: 88 -TMGEKEWYFFCV 99
>Os03g0624600 No apical meristem (NAM) protein domain containing protein
Length = 323
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 35/46 (76%)
Query: 31 LPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDL 76
LPPGFRF PTD ELV +YLARK +D GF + AI D DL + EPWDL
Sbjct: 5 LPPGFRFHPTDEELVTYYLARKVSDFGFATRAIADVDLNKCEPWDL 50
>Os09g0497900 No apical meristem (NAM) protein domain containing protein
Length = 352
Score = 65.9 bits (159), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 31 LPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDL 76
LPPGFRF PTD EL+ +YL +K AD GFT+ AI + DL + EPWDL
Sbjct: 21 LPPGFRFHPTDEELITYYLRQKIADGGFTARAIAEVDLNKCEPWDL 66
>Os10g0532000 Similar to GRAB2 protein
Length = 341
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 33/52 (63%)
Query: 25 AMISRLLPPGFRFRPTDGELVAHYLARKAADAGFTSAAIRDADLYRAEPWDL 76
++ +PPGFRF PTD ELV +YL +K A IRD DLYR EPWDL
Sbjct: 2 VIMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIRDVDLYRIEPWDL 53
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.144 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,014,550
Number of extensions: 96758
Number of successful extensions: 426
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 12
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)