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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0411900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAC-domain containing protein 18 (ANAC018) (NO APICAL MERISTEM protein) (AtNAM).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.018) R2 : 7.33e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00691 (0.0378) R2dN8 : 9.47e-05 R2N8 : 7.33e-05
σ : 0.338
deviance : 52.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.11 0.336 2.96 -0.249 0.0542 0.23 -0.124 -1.99 -0.0731 3.15 25.79 768 -- --
51.81 0.338 2.92 0.0767 0.0289 -0.0682 -0.284 -- 0.00394 22 25.79 768 -- --
51.16 0.333 2.95 -0.24 0.0533 0.223 -- -1.92 -0.0729 3.25 25.7 771 -- --
52.11 0.336 2.92 0.068 0.0417 0.0372 -- -- -0.00192 0.0136 26.62 1356 -- --
51.31 0.334 2.95 -0.24 -- 0.216 -- -1.85 -0.0719 -- 25.6 802 -- --
51.91 0.338 2.92 0.0677 0.0408 -- -0.27 -- 0.000959 22.5 -- -- -- --
52.17 0.338 2.92 0.0776 0.0472 -- -- -- 0.00108 0.53 -- -- -- --
52.17 0.336 2.92 0.0572 -- 0.057 -- -- -0.00149 -- 25.3 2758 -- --
52.16 0.336 2.92 -- 0.0338 0.0605 -- -- -0.0127 0.103 25.4 2861 -- --
52.31 0.338 2.91 0.0793 -- -- -- -- 0.00188 -- -- -- -- --
52.33 0.338 2.92 -- 0.0484 -- -- -- -0.00756 0.609 -- -- -- --
52.26 0.337 2.92 -- -- 0.0697 -- -- -0.0101 -- 25.2 2779 -- --
52.48 0.338 2.92 -- -- -- -- -- -0.00691 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.55 temperature 25.0 90 > th dose independent rect. 21 1
2 43.03 temperature 25.0 10 > th dose independent rect. 21 1
3 43.47 temperature 25.0 90 > th dose independent rect. 20 3
7 43.98 temperature 25.0 90 > th dose dependent rect. 20 3
8 44.04 temperature 25.0 10 > th dose dependent rect. 21 2
11 44.73 temperature 25.0 90 > th dose dependent rect. 21 1
15 44.90 temperature 25.0 270 > th dose dependent rect. 19 1
18 45.06 temperature 25.0 270 > th dose dependent rect. 18 4
33 46.00 temperature 25.0 90 > th dose dependent rect. 20 8
49 46.39 wind 5.0 30 < th dose dependent rect. 20 3
56 46.46 humidity 90.0 30 < th dose independent rect. 20 3
60 46.48 wind 3.0 10 < th dose independent rect. 20 3
66 46.62 humidity 80.0 30 > th dose independent rect. 20 3
159 47.81 radiation 10.0 43200 < th dose dependent rect. 21 3
175 47.88 wind 1.0 30 > th dose independent rect. 20 3
182 47.90 atmosphere 1000.0 30 > th dose independent rect. 20 3
192 47.94 temperature 10.0 1440 > th dose independent rect. 21 3
195 47.94 temperature 30.0 1440 < th dose independent rect. 21 3
199 47.94 humidity 50.0 1440 > th dose independent rect. 21 3
205 47.94 atmosphere 995.0 1440 > th dose independent rect. 21 3
206 47.94 radiation 1.0 1440 < th dose independent rect. 21 3
226 47.94 temperature 10.0 1440 > th dose independent rect. 24 21
229 47.94 radiation 1.0 1440 < th dose dependent rect. 21 3
239 47.95 atmosphere 1010.0 10 < th dose dependent rect. 22 1
246 47.97 atmosphere 995.0 30 > th dose independent rect. 23 21
247 47.97 atmosphere 995.0 30 > th dose dependent rect. 20 3
249 47.98 precipitation 0.1 30 < th dose independent rect. 20 3
250 47.98 precipitation 0.1 30 < th dose dependent rect. 20 3
252 48.00 temperature 10.0 30 > th dose independent rect. 20 3
254 48.00 temperature 30.0 30 < th dose independent rect. 20 3
255 48.00 humidity 50.0 30 > th dose independent rect. 20 3
259 48.00 atmosphere 1010.0 30 < th dose independent rect. 20 3
261 48.00 radiation 1.0 30 < th dose independent rect. 20 3
266 48.00 temperature 10.0 30 > th dose independent rect. 23 21
267 48.00 radiation 1.0 30 < th dose dependent rect. 20 3
276 48.02 wind 9.0 30 < th dose independent rect. 23 21
291 48.10 precipitation 0.1 30 < th dose independent rect. 23 21
292 48.10 humidity 50.0 30 > th dose dependent rect. 20 3
294 48.10 precipitation 0.1 30 < th dose dependent rect. 23 21
345 48.28 atmosphere 1005.0 90 < th dose dependent rect. 20 1
374 48.39 precipitation 0.1 1440 < th dose independent rect. 21 3
375 48.39 precipitation 0.1 1440 < th dose dependent rect. 21 3
377 48.41 wind 1.0 90 > th dose independent rect. 23 21
384 48.45 atmosphere 1000.0 10 > th dose independent rect. 23 23
388 48.46 humidity 50.0 30 > th dose independent rect. 23 21
442 48.65 wind 1.0 10 > th dose independent rect. 22 1
446 48.65 atmosphere 1015.0 30 < th dose independent rect. 23 21
449 48.66 temperature 10.0 10 > th dose independent rect. 22 1
451 48.66 temperature 30.0 10 < th dose independent rect. 22 1
452 48.66 humidity 50.0 10 > th dose independent rect. 22 1
455 48.66 atmosphere 995.0 10 > th dose independent rect. 22 1
456 48.66 atmosphere 1010.0 10 < th dose independent rect. 22 1
458 48.66 radiation 1.0 10 < th dose independent rect. 22 1
463 48.66 precipitation 0.1 10 < th dose independent rect. 22 1
466 48.66 temperature 10.0 10 > th dose independent rect. 23 23
467 48.66 radiation 1.0 10 < th dose dependent rect. 22 1
472 48.66 precipitation 0.1 10 < th dose dependent rect. 22 1
479 48.67 humidity 50.0 10 > th dose dependent rect. 22 1
504 48.71 atmosphere 1015.0 30 < th dose dependent rect. 20 3
509 48.72 precipitation 0.1 10 < th dose independent rect. 23 23
513 48.72 precipitation 0.1 10 < th dose dependent rect. 23 23
533 48.78 atmosphere 995.0 10 > th dose dependent rect. 22 1
549 48.80 humidity 90.0 10 < th dose dependent rect. 22 1
599 48.85 radiation 10.0 43200 < th dose dependent rect. 23 1
607 48.87 temperature 30.0 30 < th dose dependent rect. 22 1
635 48.92 wind 9.0 1440 < th dose independent rect. 23 1
636 48.92 temperature 10.0 1440 > th dose independent rect. 23 1
639 48.92 temperature 30.0 1440 < th dose independent rect. 23 1
643 48.92 humidity 50.0 1440 > th dose independent rect. 23 1
653 48.92 atmosphere 995.0 1440 > th dose independent rect. 23 1
654 48.92 radiation 1.0 1440 < th dose independent rect. 23 1
675 48.92 radiation 1.0 10 < th dose independent rect. 23 21
676 48.92 temperature 10.0 1440 > th dose independent rect. 24 23
681 48.92 radiation 1.0 1440 < th dose dependent rect. 23 1
696 48.93 wind 1.0 30 > th dose dependent rect. 22 1
730 48.98 wind 9.0 10 < th dose independent rect. 23 23
736 48.99 radiation 1.0 10 < th dose dependent rect. 23 21
783 49.14 humidity 80.0 30 > th dose independent rect. 16 7
801 49.18 radiation 20.0 10 < th dose dependent rect. 23 21
802 49.19 precipitation 0.1 1440 < th dose independent rect. 23 1
804 49.19 precipitation 0.1 1440 < th dose dependent rect. 23 1
818 49.22 temperature 10.0 30 > th dose dependent rect. 23 21
836 49.28 humidity 70.0 270 < th dose independent rect. 18 1
844 49.29 radiation 30.0 10 < th dose dependent rect. 23 11
863 49.33 atmosphere 1000.0 90 > th dose independent rect. 23 10
875 49.34 radiation 40.0 90 < th dose dependent rect. 23 10
879 49.36 radiation 20.0 30 < th dose independent rect. 23 11
995 49.53 temperature 25.0 270 > th dose dependent sin 11 NA