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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0624600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : No apical meristem (NAM) protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0356) R2 : 0.468
β1 : -1.23 (0.13) R2dD : 0.109 R2D : 0.0695
β2 : 1.56 (0.0914) R2dC : 0.341 R2C : 0.315
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.521 (0.0759) R2dN8 : 0.0736 R2N8 : 0.0201
σ : 0.669
deviance : 203.97
__
_____
C
peak time of C : 7.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.33 0.643 4.1 -1.17 1.75 0.562 -0.702 0.658 -0.503 8.45 19.88 34 -- --
188.94 0.64 4.1 -1.17 1.75 0.546 -1.14 -- -0.508 8.45 19.72 32 -- --
188.45 0.639 4.1 -1.17 1.75 0.569 -- 0.978 -0.501 8.48 19.86 35 -- --
193.05 0.647 4.1 -1.2 1.75 0.569 -- -- -0.497 8.49 19.86 32 -- --
330.47 0.847 4.14 -1.2 -- 0.156 -- 1.08 -0.493 -- 35.09 84 -- --
200.2 0.663 4.11 -1.21 1.56 -- -1.16 -- -0.522 7.58 -- -- -- --
203.97 0.669 4.11 -1.23 1.56 -- -- -- -0.521 7.55 -- -- -- --
226.12 0.7 4.3 -1.41 -- 1.6 -- -- -0.572 -- 1.414 846 -- --
228.7 0.708 4.07 -- 1.72 0.578 -- -- -0.378 8.51 20.12 35 -- --
333.94 0.854 4.15 -1.21 -- -- -- -- -0.497 -- -- -- -- --
244.14 0.731 4.08 -- 1.55 -- -- -- -0.383 7.6 -- -- -- --
239.5 0.721 4.14 -- -- 2.27 -- -- -0.329 -- 0.81 864 -- --
372.67 0.901 4.12 -- -- -- -- -- -0.362 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.19 temperature 20.0 30 > th dose independent rect. 3 5
11 175.92 temperature 20.0 90 > th dose independent rect. 13 19
12 176.13 temperature 20.0 30 > th dose independent rect. 5 3
13 176.23 precipitation 0.1 270 < th dose independent rect. 6 21
14 176.23 precipitation 0.1 270 < th dose dependent rect. 6 21
15 176.31 precipitation 0.1 270 < th dose independent rect. 4 23
16 176.31 precipitation 0.1 270 < th dose dependent rect. 4 23
17 176.35 temperature 20.0 90 > th dose independent rect. 15 17
26 176.65 temperature 25.0 270 < th dose independent rect. 2 5
32 177.20 temperature 30.0 270 < th dose independent rect. 13 18
39 177.45 temperature 25.0 270 < th dose independent rect. 3 2
42 177.46 temperature 25.0 90 < th dose independent rect. 3 19
46 177.63 wind 1.0 90 > th dose independent rect. 8 21
65 178.28 wind 1.0 270 > th dose independent rect. 7 19
66 178.29 humidity 80.0 270 > th dose independent rect. 2 4
76 178.62 temperature 10.0 270 > th dose dependent rect. 3 3
90 178.90 humidity 50.0 270 > th dose independent rect. 14 16
92 178.93 humidity 50.0 270 > th dose independent rect. 13 18
99 179.09 temperature 15.0 10 > th dose dependent rect. 3 5
120 179.48 humidity 50.0 270 > th dose independent rect. 2 17
125 179.55 radiation 40.0 270 < th dose dependent rect. 3 3
126 179.56 wind 9.0 270 < th dose independent rect. 3 3
127 179.56 temperature 10.0 270 > th dose independent rect. 3 3
130 179.56 humidity 50.0 270 > th dose independent rect. 3 3
133 179.56 atmosphere 995.0 270 > th dose independent rect. 3 3
134 179.56 atmosphere 1015.0 270 < th dose independent rect. 3 3
135 179.56 radiation 20.0 270 < th dose independent rect. 3 3
138 179.56 temperature 10.0 270 > th dose independent rect. 6 21
146 179.67 precipitation 0.1 270 < th dose independent rect. 3 3
147 179.67 precipitation 0.1 270 < th dose dependent rect. 3 3
158 179.74 radiation 20.0 270 < th dose dependent rect. 2 5
161 179.77 temperature 15.0 270 > th dose independent rect. 11 10
170 179.97 humidity 80.0 270 > th dose independent rect. 1 6
182 180.08 humidity 50.0 270 > th dose dependent rect. 3 3
184 180.09 wind 9.0 270 < th dose independent rect. 2 5
185 180.09 temperature 10.0 270 > th dose independent rect. 2 5
188 180.09 humidity 50.0 270 > th dose independent rect. 2 5
190 180.09 atmosphere 995.0 270 > th dose independent rect. 2 5
191 180.09 atmosphere 1015.0 270 < th dose independent rect. 2 5
192 180.09 radiation 40.0 270 < th dose independent rect. 2 5
193 180.09 temperature 10.0 270 > th dose independent rect. 7 19
196 180.10 wind 9.0 270 < th dose independent rect. 6 21
202 180.16 precipitation 0.1 270 < th dose independent rect. 2 5
203 180.16 atmosphere 1015.0 270 < th dose independent rect. 11 10
206 180.16 precipitation 0.1 270 < th dose dependent rect. 2 5
229 180.33 temperature 20.0 720 > th dose independent rect. 19 3
240 180.44 wind 9.0 270 < th dose independent rect. 7 19
279 180.62 humidity 70.0 90 > th dose independent rect. 15 17
281 180.62 temperature 15.0 10 > th dose dependent rect. 5 3
293 180.74 humidity 50.0 90 > th dose dependent rect. 15 17
296 180.75 temperature 10.0 30 > th dose dependent rect. 8 19
316 180.91 humidity 50.0 270 > th dose independent rect. 11 10
317 180.92 radiation 1.0 270 < th dose independent rect. 2 17
366 181.11 atmosphere 1010.0 270 < th dose independent rect. 13 17
379 181.18 temperature 25.0 270 > th dose independent rect. 22 14
385 181.22 radiation 1.0 10 > th dose independent rect. 5 3
400 181.22 radiation 10.0 270 < th dose dependent rect. 2 16
413 181.28 precipitation 0.1 270 < th dose independent rect. 21 14
414 181.28 precipitation 0.1 270 < th dose dependent rect. 21 14
416 181.31 atmosphere 1015.0 90 < th dose independent rect. 13 19
422 181.36 temperature 25.0 90 < th dose independent rect. 3 16
434 181.47 atmosphere 1005.0 270 > th dose independent rect. 3 3
447 181.53 humidity 50.0 270 > th dose independent rect. 21 14
451 181.54 temperature 10.0 270 > th dose independent rect. 21 14
452 181.54 atmosphere 995.0 270 > th dose independent rect. 21 14
454 181.55 wind 9.0 270 < th dose independent rect. 21 14
457 181.55 atmosphere 995.0 270 > th dose dependent rect. 19 7
461 181.58 temperature 30.0 90 < th dose dependent rect. 3 19
462 181.59 wind 1.0 270 > th dose independent rect. 2 5
465 181.61 temperature 10.0 270 > th dose dependent rect. 8 2
481 181.66 temperature 20.0 30 > th dose independent rect. 20 12
483 181.66 radiation 40.0 270 < th dose dependent rect. 14 16
490 181.70 atmosphere 1005.0 30 > th dose independent rect. 5 3
499 181.74 atmosphere 1000.0 270 > th dose dependent rect. 21 5
512 181.78 radiation 40.0 90 < th dose dependent rect. 13 19
513 181.79 radiation 1.0 90 > th dose independent sin 12 NA
524 181.85 atmosphere 995.0 270 > th dose dependent rect. 3 3
529 181.87 wind 9.0 270 < th dose independent rect. 11 10
583 182.10 temperature 10.0 270 > th dose dependent rect. 7 4
586 182.14 wind 1.0 270 > th dose independent rect. 19 7
589 182.16 wind 1.0 270 > th dose independent rect. 3 3
599 182.20 atmosphere 1015.0 90 < th dose independent rect. 15 17
612 182.25 humidity 50.0 270 > th dose dependent rect. 17 14
615 182.28 atmosphere 995.0 270 > th dose independent rect. 7 19
618 182.30 wind 1.0 270 > th dose independent rect. 21 14
634 182.37 radiation 20.0 30 < th dose independent rect. 3 19
641 182.40 atmosphere 995.0 270 > th dose independent rect. 6 21
642 182.41 temperature 25.0 270 < th dose independent sin 8 NA
643 182.41 radiation 20.0 10 < th dose independent rect. 5 3
683 182.50 temperature 25.0 270 > th dose independent sin 8 NA
689 182.52 precipitation 0.1 270 < th dose independent rect. 18 8
691 182.52 precipitation 0.1 270 < th dose dependent rect. 18 8
693 182.53 radiation 20.0 90 < th dose independent rect. 15 17
697 182.55 temperature 30.0 270 < th dose independent rect. 13 6
699 182.55 precipitation 0.1 270 < th dose independent rect. 16 10
702 182.55 precipitation 0.1 270 < th dose dependent rect. 16 10
724 182.60 atmosphere 995.0 270 > th dose independent rect. 11 10
738 182.65 wind 9.0 270 < th dose dependent rect. 3 3
744 182.67 atmosphere 1000.0 270 > th dose dependent rect. 22 3
745 182.67 radiation 10.0 270 < th dose dependent rect. 2 10
762 182.73 wind 1.0 270 > th dose independent rect. 11 10
783 182.81 temperature 25.0 90 > th dose independent rect. 8 5
804 182.87 temperature 15.0 270 > th dose independent rect. 2 17
806 182.87 atmosphere 1015.0 270 < th dose independent rect. 10 22
809 182.88 radiation 20.0 30 < th dose independent rect. 5 17
828 182.94 radiation 40.0 90 < th dose independent rect. 13 19
846 182.99 wind 9.0 10 < th dose independent rect. 8 21
881 183.02 atmosphere 1015.0 10 < th dose independent rect. 15 17
900 183.05 atmosphere 995.0 10 > th dose dependent rect. 5 3
906 183.07 wind 5.0 270 < th dose independent rect. 19 7
911 183.08 atmosphere 995.0 270 > th dose dependent rect. 2 5
945 183.12 temperature 20.0 10 > th dose dependent rect. 8 5
948 183.13 precipitation 0.1 90 < th dose independent rect. 5 2
952 183.13 precipitation 0.1 90 < th dose dependent rect. 5 2
954 183.14 wind 7.0 90 < th dose independent rect. 5 2
956 183.14 temperature 10.0 90 > th dose independent rect. 5 2
959 183.14 humidity 50.0 90 > th dose independent rect. 5 2
961 183.14 atmosphere 995.0 90 > th dose independent rect. 5 2
962 183.14 atmosphere 1015.0 90 < th dose independent rect. 5 2
963 183.14 radiation 40.0 90 < th dose independent rect. 5 2
981 183.17 wind 7.0 10 < th dose independent rect. 5 3
983 183.17 temperature 10.0 10 > th dose independent rect. 5 3
985 183.17 temperature 30.0 10 < th dose independent rect. 5 3
986 183.17 humidity 50.0 10 > th dose independent rect. 5 3
988 183.17 atmosphere 995.0 10 > th dose independent rect. 5 3
989 183.17 atmosphere 1015.0 10 < th dose independent rect. 5 3
993 183.17 temperature 10.0 10 > th dose independent rect. 8 21