Os04g0460600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM / CUC2-like protein.
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Os04g0460600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM / CUC2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.24 | 0.55 | 8.71 | -2.82 | 0.509 | 1.48 | 1.92 | 6.42 | -0.178 | 0.817 | 0.6726 | 4284 | -- | -- |
| 146.22 | 0.563 | 8.56 | -2.03 | 0.34 | 0.741 | 1.6 | -- | 0.0978 | 0.487 | 7.438 | 27529 | -- | -- |
| 143.08 | 0.557 | 8.7 | -2.92 | 0.229 | 1.5 | -- | 6.39 | -0.175 | 0.358 | 1.491 | 11928 | -- | -- |
| 150.03 | 0.57 | 8.49 | -1.8 | 0.255 | 0.816 | -- | -- | 0.193 | 0.0537 | 6.35 | 31916 | -- | -- |
| 145.27 | 0.561 | 8.7 | -2.74 | -- | 1.61 | -- | 6.15 | -0.135 | -- | 1.274 | 11922 | -- | -- |
| 166.89 | 0.606 | 8.58 | -1.8 | 0.393 | -- | 1.5 | -- | -0.0622 | 0.973 | -- | -- | -- | -- |
| 176.3 | 0.622 | 8.58 | -1.86 | 0.39 | -- | -- | -- | -0.0698 | 0.766 | -- | -- | -- | -- |
| 153.14 | 0.576 | 8.5 | -1.47 | -- | 1.11 | -- | -- | 0.19 | -- | 5.22 | 32026 | -- | -- |
| 153.45 | 0.577 | 8.39 | -- | 0.418 | 1.76 | -- | -- | 0.788 | 0.752 | 3.579 | 47520 | -- | -- |
| 185.8 | 0.637 | 8.57 | -1.84 | -- | -- | -- | -- | -0.0627 | -- | -- | -- | -- | -- |
| 267.28 | 0.765 | 8.54 | -- | 0.361 | -- | -- | -- | 0.137 | 0.53 | -- | -- | -- | -- |
| 164.37 | 0.597 | 8.38 | -- | -- | 1.73 | -- | -- | 0.787 | -- | 3.614 | 47520 | -- | -- |
| 275.47 | 0.775 | 8.53 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 4 | 125.40 | temperature | 25 | 10 | > th | dose dependent | sin | 2 | NA |
| 7 | 125.83 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 8 | 125.93 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 17 | 126.57 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 28 | 126.95 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 31 | 126.98 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 38 | 127.23 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 40 | 127.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 48 | 127.83 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 53 | 128.05 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 55 | 128.14 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 57 | 128.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 82 | 128.57 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 85 | 128.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 99 | 128.95 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 5 |
| 125 | 129.38 | wind | 3 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 159 | 129.78 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 182 | 130.03 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 183 | 130.03 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 191 | 130.10 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 213 | 130.23 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 214 | 130.23 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 263 | 130.58 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 293 | 130.68 | temperature | 25 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 306 | 130.73 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 314 | 130.75 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 349 | 130.89 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 374 | 130.99 | temperature | 25 | 43200 | < th | dose independent | sin | 12 | NA |
| 391 | 131.02 | temperature | 25 | 43200 | > th | dose dependent | rect. | 19 | 17 |
| 420 | 131.10 | temperature | 25 | 43200 | > th | dose independent | sin | 12 | NA |
| 470 | 131.20 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 479 | 131.22 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 493 | 131.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 539 | 131.29 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 554 | 131.29 | temperature | 25 | 43200 | > th | dose dependent | sin | 7 | NA |
| 588 | 131.34 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 601 | 131.36 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 629 | 131.40 | temperature | 30 | 43200 | < th | dose independent | sin | 5 | NA |
| 630 | 131.40 | temperature | 30 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 655 | 131.45 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 662 | 131.46 | temperature | 30 | 43200 | > th | dose independent | sin | 5 | NA |
| 665 | 131.46 | temperature | 30 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 674 | 131.46 | temperature | 30 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 835 | 131.63 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 846 | 131.64 | temperature | 30 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 988 | 131.78 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 23 |