Os10g0532000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GRAB2 protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0532000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to GRAB2 protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.77 | 0.535 | 3.65 | -1.74 | 0.448 | 0.849 | -0.182 | -4.31 | -0.605 | 20.1 | 25.1 | 5328 | -- | -- |
| 132.28 | 0.536 | 3.53 | -1.25 | 0.489 | 1.33 | -0.0672 | -- | -0.498 | 20.3 | 19.4 | 9718 | -- | -- |
| 129.86 | 0.531 | 3.65 | -1.75 | 0.448 | 0.85 | -- | -4.33 | -0.607 | 20 | 25.1 | 5327 | -- | -- |
| 132.32 | 0.536 | 3.53 | -1.2 | 0.489 | 1.3 | -- | -- | -0.502 | 20.2 | 19.32 | 9718 | -- | -- |
| 140.38 | 0.552 | 3.64 | -1.76 | -- | 0.9 | -- | -4.23 | -0.621 | -- | 25.34 | 5141 | -- | -- |
| 153.83 | 0.581 | 3.45 | -0.244 | 0.485 | -- | -0.362 | -- | -0.14 | 20.6 | -- | -- | -- | -- |
| 154.23 | 0.582 | 3.45 | -0.232 | 0.489 | -- | -- | -- | -0.139 | 20.4 | -- | -- | -- | -- |
| 144.83 | 0.56 | 3.52 | -1.21 | -- | 1.29 | -- | -- | -0.494 | -- | 19.4 | 9577 | -- | -- |
| 146.86 | 0.564 | 3.48 | -- | 0.456 | 0.572 | -- | -- | -0.262 | 20 | 21.4 | 5432 | -- | -- |
| 167.55 | 0.605 | 3.44 | -0.234 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 155.64 | 0.584 | 3.44 | -- | 0.49 | -- | -- | -- | -0.113 | 20.4 | -- | -- | -- | -- |
| 159.29 | 0.588 | 3.47 | -- | -- | 0.481 | -- | -- | -0.254 | -- | 22.9 | 5215 | -- | -- |
| 168.99 | 0.607 | 3.43 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.94 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 4 | 125.98 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 14 | 126.28 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 23 | 12 |
| 27 | 126.44 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 23 | 10 |
| 35 | 126.55 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 37 | 126.56 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 38 | 126.56 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 39 | 126.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 9 |
| 45 | 126.60 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 49 | 126.69 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 62 | 126.87 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 67 | 127.07 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 69 | 127.09 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 109 | 127.94 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 111 | 127.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 120 | 128.42 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 138 | 128.81 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 140 | 128.81 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 141 | 128.81 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 142 | 128.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 143 | 128.82 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 148 | 128.85 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 167 | 128.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 168 | 128.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 173 | 128.99 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 195 | 129.07 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 209 | 129.12 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 212 | 129.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 215 | 129.15 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 218 | 129.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 219 | 129.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 271 | 129.30 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 329 | 129.45 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 362 | 129.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 389 | 129.57 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 11 | NA |
| 392 | 129.57 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 400 | 129.59 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 420 | 129.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 429 | 129.63 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 452 | 129.66 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 469 | 129.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 481 | 129.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 486 | 129.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 490 | 129.72 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 6 |
| 539 | 129.80 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 544 | 129.81 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 566 | 129.84 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 589 | 129.89 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 600 | 129.91 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 609 | 129.92 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 627 | 129.94 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 639 | 129.97 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 685 | 130.04 | wind | 9.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 694 | 130.05 | temperature | 20.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 713 | 130.07 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 19 | 10 |
| 722 | 130.08 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 24 | 10 |
| 731 | 130.09 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 741 | 130.11 | temperature | 20.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 753 | 130.12 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 758 | 130.13 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 773 | 130.14 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 775 | 130.14 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 782 | 130.15 | wind | 7.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 862 | 130.25 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 866 | 130.26 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 872 | 130.26 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 875 | 130.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 12 |
| 925 | 130.32 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 939 | 130.34 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 940 | 130.34 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 957 | 130.36 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 970 | 130.37 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 997 | 130.40 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 1000 | 130.40 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 9 |