BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0383400 Os09g0383400|AK103385
(498 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0383400 DEAD/DEAH box helicase, N-terminal domain cont... 885 0.0
Os04g0510400 Similar to RNA helicase (Fragment) 100 5e-21
AK107287 87 4e-17
Os03g0728800 Similar to RNA helicase (Fragment) 82 1e-15
Os08g0416100 DEAD/DEAH box helicase, N-terminal domain cont... 80 3e-15
Os01g0184500 DEAD/DEAH box helicase, N-terminal domain cont... 80 4e-15
Os03g0108600 DEAD/DEAH box helicase, N-terminal domain cont... 77 4e-14
Os06g0535100 Similar to Helicase pitchoune (Fragment) 75 1e-13
Os01g0549400 Similar to RNA helicase-like protein DB10 73 5e-13
Os02g0826100 Similar to RNA helicase (Fragment) 72 6e-13
Os01g0172200 WW/Rsp5/WWP domain containing protein 72 1e-12
Os03g0708600 DEAD/DEAH box helicase, N-terminal domain cont... 70 3e-12
Os07g0633500 DEAD/DEAH box helicase, N-terminal domain cont... 70 4e-12
Os01g0618400 Similar to RNA helicase (Fragment) 69 1e-11
Os03g0669000 Similar to RNA helicase (Fragment) 68 1e-11
Os11g0689400 WW/Rsp5/WWP domain containing protein 68 2e-11
Os01g0164500 Similar to ATP-dependent RNA helicase-like pro... 68 2e-11
>Os09g0383400 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 498
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/455 (95%), Positives = 433/455 (95%)
Query: 44 WRLLSRPRXXXXXXXXXXXXXXXXXXXXXXFFSEESTSWESLGVSDRLASALHGAGLARP 103
WRLLSRPR FFSEESTSWESLGVSDRLASALHGAGLARP
Sbjct: 44 WRLLSRPRALATAAAEADDAGAGGNGDGDGFFSEESTSWESLGVSDRLASALHGAGLARP 103
Query: 104 SLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPN 163
SLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPN
Sbjct: 104 SLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPN 163
Query: 164 IALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNY 223
IALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNY
Sbjct: 164 IALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNY 223
Query: 224 LFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGK 283
LFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGK
Sbjct: 224 LFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGK 283
Query: 284 EISLGDTNEYREDSDSQSAELSADDEENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYR 343
EISLGDTNEYREDSDSQSAELSADDEENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYR
Sbjct: 284 EISLGDTNEYREDSDSQSAELSADDEENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYR 343
Query: 344 RSKQYVFVAATLPQSGKKTAGGVLKRMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVS 403
RSKQYVFVAATLPQSGKKTAGGVLKRMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVS
Sbjct: 344 RSKQYVFVAATLPQSGKKTAGGVLKRMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVS 403
Query: 404 ALLDAVKYGLKNEVHDTKLGPNRTMVFTNTVDAANSVSDILQRVGVPCILYHRDSSLEER 463
ALLDAVKYGLKNEVHDTKLGPNRTMVFTNTVDAANSVSDILQRVGVPCILYHRDSSLEER
Sbjct: 404 ALLDAVKYGLKNEVHDTKLGPNRTMVFTNTVDAANSVSDILQRVGVPCILYHRDSSLEER 463
Query: 464 AKNLQSFRENGGVLVCTDAAARGLDVPNVSHVIQV 498
AKNLQSFRENGGVLVCTDAAARGLDVPNVSHVIQV
Sbjct: 464 AKNLQSFRENGGVLVCTDAAARGLDVPNVSHVIQV 498
>Os04g0510400 Similar to RNA helicase (Fragment)
Length = 832
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/431 (25%), Positives = 187/431 (43%), Gaps = 53/431 (12%)
Query: 77 EESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVL-TTNDVIVAAETGSGKTHGYL 135
+E +W L + L +A+ G P+ +Q AC P DVI AAETGSGKT +
Sbjct: 195 DEVYAWRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFG 254
Query: 136 VPLIEKLCSKS-----ISAEDGNSQDVTS-GSPNIALVLCPNVMLCEQV---VRMANSLV 186
+P++++L + +S ED ++QD S SP AL+L P L +QV ++ A +
Sbjct: 255 LPILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL 314
Query: 187 DESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVF 246
P+ ++ + +P+I+V TP L + + + L ++ F V
Sbjct: 315 RIQVVPIVGGLSMEKQERLLKRKPEIVVGTPGRLWELMSTGNQHLIK----LHSLSFFVL 370
Query: 247 DEADMLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGKEISLGDTNEYREDSDSQSAELSA 306
DEAD ++ +++ +I ML TN SD Q+ +
Sbjct: 371 DEADRMIERGHFHELQSIIEMLPV-------------------TN----GSDEQTVGTTP 407
Query: 307 DDEENEDGLVQHRPVNVENAHIGAHKKDWRRVRKVYRRSKQYVFVAATLPQSGKKTAGGV 366
E ++ R V +A + +++++ +K + ++ K A
Sbjct: 408 SCETVPILQIKKRQTFVFSATLALSANFRKKLKRGLVTAKASASTDLSSIEALSKQA--- 464
Query: 367 LKRMFPNAVWVSGAYLHRHNPRLERRWIEVTADTQVSALLDAVKYGLKNEVHDTKLGPNR 426
RM PNA V +LE +IE + D + DA Y + + VH G R
Sbjct: 465 --RMKPNAEIVDLTKASILPEKLEESFIECSDDDK-----DAYLYYILS-VH----GQGR 512
Query: 427 TMVFTNTVDAANSVSDILQRVGVPCILYHRDSSLEERAKNLQSFREN-GGVLVCTDAAAR 485
T++F ++ A +S IL+ +G+ + H R K + FRE+ +LV TD AR
Sbjct: 513 TIIFCTSIAALRHLSSILRVLGINVLTNHAQMQQRARMKAVDRFRESENSILVATDGFAR 572
Query: 486 GLDVPNVSHVI 496
G+D +V VI
Sbjct: 573 GMDFDDVRTVI 583
>AK107287
Length = 554
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 25/202 (12%)
Query: 80 TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLI 139
TS++ G D + S + G A PS +Q+ P L+ D++ AETGSGKT G+ +P +
Sbjct: 133 TSFDEAGFPDYILSEIKKMGFAEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAM 192
Query: 140 EKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAV 199
+ ++ + + G IAL+L P L Q+ N S L++ A
Sbjct: 193 VHINAQPL---------LKPGDGPIALILAPTRELANQIQVECNRFGGSS--RLRTCAVY 241
Query: 200 CG-PKGWPTVR-----PDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLL 253
G PKG P R +I++ATP L++ + D K LR V ++V DEAD +L
Sbjct: 242 GGVPKG-PQTRDLQRGAEIVIATPGRLIDMV---DAGKTN----LRRVTYLVMDEADRML 293
Query: 254 CGSFENQVIRLIHMLRFDEKLL 275
FE Q+ +++ +R D + L
Sbjct: 294 DMGFEPQIRKILQQIRPDRQTL 315
>Os03g0728800 Similar to RNA helicase (Fragment)
Length = 670
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 30/208 (14%)
Query: 81 SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIE 140
S++ LG+ ++L AL GL + + +Q IP +L DV+ A+TGSGKT YL+P++
Sbjct: 93 SFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLH 152
Query: 141 KLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSA---- 196
+L +SAE + +PN+ +L P LC+QV A+SL++ LK
Sbjct: 153 ELL--KLSAEGR----IRKSAPNV-FILVPTRELCQQVHNEASSLLEFCTSKLKVVQVNA 205
Query: 197 --------AAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDE 248
A+ GP P+ILV TPA + + + R ++ ++ DE
Sbjct: 206 SMSDKDIKVALSGP-------PNILVTTPACVASCI---SKGIIRGSSIKESLSMMILDE 255
Query: 249 ADMLLCGSFENQVIRLI-HMLRFDEKLL 275
AD+LL E+ + L+ H+ R + +L
Sbjct: 256 ADLLLSYRCEDDIKALVPHIPRSCQSIL 283
>Os08g0416100 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 851
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 78 ESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVP 137
+S +ES+G+ + + + G P+ +Q +P +L +D+ A TGSGKT +LVP
Sbjct: 47 KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVP 106
Query: 138 LIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAA 197
+I++L +G+ AL+L P L Q ++ A L + LK +
Sbjct: 107 MIQRLRRHD------------AGAGIRALILSPTRDLATQTLKFAQQLGKFTD--LKISL 152
Query: 198 AVCGPKGWPTVR-----PDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADML 252
V G PDI++ATP L+++L + + + LR V+++VFDEAD L
Sbjct: 153 IVGGDSMESQFEELAENPDIIIATPGRLVHHLAEVE------DLNLRTVEYVVFDEADSL 206
Query: 253 LCGSFENQVIRLIHML 268
Q+ ++H L
Sbjct: 207 FSLGLIQQLHDILHKL 222
>Os01g0184500 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 625
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 81 SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIE 140
S+E LG+ + + +AL G+++P+ +Q +P VL V++ + TGSGKT YL+PL++
Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQ 170
Query: 141 KLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVC 200
L + A G S + P A+VLCP L EQV R+A S+ + +S
Sbjct: 171 LL--RRDEAMLGMS--MKPRRPR-AVVLCPTRELTEQVFRVAKSISHHAR--FRSTMVSG 223
Query: 201 GPKGWP-----TVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCG 255
G + P + D++V TP +L+++ D + ++K++V DEAD +
Sbjct: 224 GSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGN-------MVYGDIKYLVLDEADTMFDQ 276
Query: 256 SFENQVIRLIHMLR 269
F + + + L+
Sbjct: 277 GFGPDIRKFLAPLK 290
>Os03g0108600 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 653
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 96/200 (48%), Gaps = 25/200 (12%)
Query: 74 FFSEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHG 133
FFS S ++ +G SD + AL G RPS +QA VL I+ ++GSGKT
Sbjct: 248 FFSRRS--FKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLA 305
Query: 134 YLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPL 193
YL P+++ L + + +S +P + +VL P L QV+ S + +SG P
Sbjct: 306 YLCPVVQNLRKEEVEGLHRSSPR----NPRV-VVLTPTAELASQVLNNCRS-ISKSGVPF 359
Query: 194 KSAAAVCGPKGWPTVRP-----DILVATPAALLNYLFDYDPEKRRRERF--LRNVKFIVF 246
+S A G + + D+L+ATP L YL +E F L N++ +V
Sbjct: 360 RSMVATGGFRQKTQLESLDQELDVLIATPGRFL-YLL--------QEGFVQLNNLRCVVL 410
Query: 247 DEADMLLC-GSFENQVIRLI 265
DE D+L SFE + +LI
Sbjct: 411 DEVDILYGEESFEQVLHQLI 430
>Os06g0535100 Similar to Helicase pitchoune (Fragment)
Length = 500
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 82 WESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEK 141
+ L +SD A+A+ + +QA IP ++ +DV+ +A+TGSGKT +L+P IE
Sbjct: 88 FSDLPISDLTANAIRDMNYTHLTEIQARSIPPLMLGSDVMASAKTGSGKTLAFLIPAIEL 147
Query: 142 LCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 201
LC S +G +VLCP L Q +A L+ + L
Sbjct: 148 LCRLRFSPRNGTG----------VIVLCPTRELAIQTHNVAKELMRYHSQTLGYVIGGID 197
Query: 202 PKGWPTVRP---DILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFE 258
+G ++LVATP LL+++ +K + ++ +K ++ DEAD +L +FE
Sbjct: 198 LRGEAEQLAKGINVLVATPGRLLDHM-----QKTKSFKY-ECLKCLIIDEADRILEQNFE 251
Query: 259 NQVIRLIHML 268
Q+ ++ +L
Sbjct: 252 EQMKQIFKLL 261
>Os01g0549400 Similar to RNA helicase-like protein DB10
Length = 792
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 93/195 (47%), Gaps = 32/195 (16%)
Query: 80 TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVP-- 137
TS+E+ G + + AG + P+ +QA P L DV+ A+TGSGKT GYL+P
Sbjct: 150 TSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGF 209
Query: 138 -LIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSA 196
I++L Q+ P + LVL P L Q++ A S + S
Sbjct: 210 MHIKRL------------QNNPRSGPTV-LVLAPTRELATQILEEAVKFGRSSR--ISST 254
Query: 197 AAVCG-PKGWPTVRP-----DILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEAD 250
G PKG P +R D++VATP L + L E RR L+ V ++V DEAD
Sbjct: 255 CLYGGAPKG-PQLRDLDRGVDVVVATPGRLNDIL-----EMRRIS--LKQVSYLVLDEAD 306
Query: 251 MLLCGSFENQVIRLI 265
+L FE Q+ +++
Sbjct: 307 RMLDMGFEPQIRKIV 321
>Os02g0826100 Similar to RNA helicase (Fragment)
Length = 811
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 82 WESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEK 141
+E G+S AL AG + ++VQ +P L DV+V A+TG+GK+ +L+P IE
Sbjct: 344 FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIES 403
Query: 142 LCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 201
+ + S + SP +L+LCP L Q+ AN L+ + + + + + G
Sbjct: 404 VLNAMKSHTNHRV------SPIFSLILCPTRELAIQLTAEANVLL-KYHQGIGVQSLIGG 456
Query: 202 PKGWPTVRP------DILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCG 255
+ R ILVATP LL+++ + R L +K +V DEAD LL
Sbjct: 457 TRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVR----LMGLKLLVLDEADHLLDL 512
Query: 256 SFENQVIRLIHML 268
F + +++ L
Sbjct: 513 GFRTDIEKIVDSL 525
>Os01g0172200 WW/Rsp5/WWP domain containing protein
Length = 759
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 98 AGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDV 157
AG + P+ +QA P L D++ A+TGSGKT GYL+P L ++ DG
Sbjct: 249 AGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDG----- 303
Query: 158 TSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVC----GPKGWPTVR---- 209
P + LVL P L Q+ A S ++VC PKG P +R
Sbjct: 304 ----PTV-LVLSPTRELATQIQDEAKKFGRSS-----RISSVCLYGGAPKG-PQLRDLER 352
Query: 210 -PDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCGSFENQVIRLIHML 268
DI+VATP L + L E RR L V ++V DEAD +L FE Q+ +++ +
Sbjct: 353 GADIVVATPGRLNDIL-----EMRRVS--LHQVSYLVLDEADRMLDMGFEPQIRKIVKQV 405
Query: 269 RFDEKLL 275
+ + L
Sbjct: 406 QPKRQTL 412
>Os03g0708600 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 736
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%)
Query: 82 WESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEK 141
W + L A+ AG PS +Q A IP L DVI AETGSGKT +++P++
Sbjct: 317 WSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSY 376
Query: 142 LCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 201
+ +E+ ++ A+V+ P L +Q+ G +K + V G
Sbjct: 377 ITRLPPISEENEAEG------PYAVVMAPTRELAQQIEEETVKFATYLG--IKVVSIVGG 428
Query: 202 ----PKGWPTVRP-DILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLCGS 256
+G+ + ++++ATP LL+ L RR L ++V DEAD ++
Sbjct: 429 QSIEEQGFKIRQGCEVVIATPGRLLDCL-------ERRYAVLNQCNYVVLDEADRMIDMG 481
Query: 257 FENQVIRLIHML 268
FE QV+ ++ +
Sbjct: 482 FEPQVVGVLDAM 493
>Os07g0633500 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 501
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 31/190 (16%)
Query: 80 TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLI 139
+++ LG+S L G+ P+ VQ CIP L DV+ AETGSGKT + +P++
Sbjct: 77 STFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPIL 136
Query: 140 EKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEP--LKSAA 197
+L AL L P L Q+ +L G P L+ A
Sbjct: 137 HRLGEDPYGVA--------------ALALAPTRELAAQLAEQFRAL----GAPLGLRCLA 178
Query: 198 AVCG------PKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADM 251
A+ G KG RP ++VATP + + D DP+ + KF+V DEAD
Sbjct: 179 AIGGFDSLGQAKGLAR-RPHVVVATPGRIATLIND-DPDL---AKVFARTKFLVLDEADR 233
Query: 252 LLCGSFENQV 261
+L +FE +
Sbjct: 234 VLDINFEEDL 243
>Os01g0618400 Similar to RNA helicase (Fragment)
Length = 594
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 80 TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLI 139
T ++ +S A+ AG R + VQ A +P +L DV+ A+TG+GKT +L+P I
Sbjct: 126 TRFDQCTISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAI 185
Query: 140 EKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAV 199
E L SA + +D S N+ LV+CP L QV A L+ + L +
Sbjct: 186 EVL-----SALPNSRRDQLRPSINL-LVMCPTRELAIQVAVEAKKLL-KYHRSLGVQVVI 238
Query: 200 CGPKGWPTVRP------DILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLL 253
G + R ILVATP L +++ + R L+ VK +V DEAD LL
Sbjct: 239 GGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTR----LKGVKVLVLDEADRLL 294
Query: 254 CGSFENQVIRLI 265
F + R+I
Sbjct: 295 DMGFRRDIERII 306
>Os03g0669000 Similar to RNA helicase (Fragment)
Length = 472
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 25/194 (12%)
Query: 80 TSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLI 139
+++ LGV L +A G P+ +QA IPH L D+I +TGSGKT + +P+I
Sbjct: 41 STFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPII 100
Query: 140 EKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAV 199
+ L QD A VL P L Q+ + +L G L V
Sbjct: 101 QALL----------KQDKPQAL--FACVLSPTRELAFQIGQQFEALGSAIG--LSCTVLV 146
Query: 200 CGPKGWPTV-----RPDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEADMLLC 254
G RP I+V TP LL++L D + L +K++V DEAD LL
Sbjct: 147 GGVDRVQQAVSLAKRPHIVVGTPGRLLDHLTDT------KGFSLNKLKYLVLDEADKLLN 200
Query: 255 GSFENQVIRLIHML 268
F+ + +++++
Sbjct: 201 VEFQKALDDILNVI 214
>Os11g0689400 WW/Rsp5/WWP domain containing protein
Length = 1398
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 34/216 (15%)
Query: 81 SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIE 140
++E+ G + +H AG P+ +QA P L D++ A+TGSGKT GYL+P
Sbjct: 605 TFEATGFPPEILQEIHAAGFLNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPAFI 664
Query: 141 KLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVC 200
L + +L P V++ +A+ + DE+ + +S+ C
Sbjct: 665 HLRRYQNNP-----------------MLGPTVLVLAPTRELASQIQDEAVKFGRSSRVSC 707
Query: 201 -----GPKGWPTVR-----PDILVATPAALLNYLFDYDPEKRRRERFLRNVKFIVFDEAD 250
G +R DI+VATP L + L R+ L V F+V DEAD
Sbjct: 708 TCLYGGTSKGLQLRELERGADIVVATPGRLNDIL-------EMRKISLHQVSFLVLDEAD 760
Query: 251 MLLCGSFENQVIRLIHMLRFDEKLLSRMEDSGKEIS 286
+L FE Q+ +++ + + + L KE++
Sbjct: 761 RMLDMGFEPQIRKIVDEIPRNRQTLMYTATWPKEVT 796
>Os01g0164500 Similar to ATP-dependent RNA helicase-like protein
Length = 647
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 34/205 (16%)
Query: 76 SEESTSWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYL 135
+E+ S S +S + AL G G R + VQAA IP +L+ DV V A TGSGKT ++
Sbjct: 19 TEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFV 78
Query: 136 VPLIEKLCSKSISAEDGNSQDVTSGSPN--IALVLCPNVMLCEQVVRMA----------N 183
VP++E L + + P+ + +++ P L Q+ +A +
Sbjct: 79 VPVVEILRRRP-----------SPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVS 127
Query: 184 SLVDESGEPLKSAAAVCGPKGWPTVRPDILVATPAALLNYLFDYDPEKRRRERFLRNVKF 243
S++ G +K+ +G +ILV TP L + + D +N++
Sbjct: 128 SMLLVGGFDIKAELKKLEEEGA-----NILVGTPGKLFDVMERLDTLN------YKNLEI 176
Query: 244 IVFDEADMLLCGSFENQVIRLIHML 268
++ DEAD LL F+ Q+ +I L
Sbjct: 177 LILDEADRLLDLGFQKQITSIISKL 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,113,031
Number of extensions: 641160
Number of successful extensions: 2733
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 18
Length of query: 498
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 393
Effective length of database: 11,553,331
Effective search space: 4540459083
Effective search space used: 4540459083
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)