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Os02g0826100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA helicase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.92 (0.0327) R2 : 0.798
β1 : 1.22 (0.12) R2dD : 0.0475 R2D : 0.0205
β2 : 4.15 (0.106) R2dC : 1.1 R2C : 0.51
β3 : 1.6 (0.0932) R2dE : 0.203 R2E : -0.358
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.67 (0.0699) R2dN8 : 0.0562 R2N8 : 0.00855
σ : 0.614
deviance : 171.41
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_____
C
peak time of C : 16.9
E
wheather : radiation
threshold : 3.459
memory length : 18
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.97
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.72 0.599 8.91 1.21 4.36 1.83 2.4 1.74 0.688 16.6 6.214 10 2.74 --
169.97 0.607 8.92 1.19 4.36 1.79 1.18 -- 0.667 16.7 6.228 9 2.59 --
170.08 0.612 8.91 1.21 4.31 1.92 -- 0.606 0.686 16.4 5.757 16 3.31 --
171.41 0.614 8.92 1.22 4.15 1.6 -- -- 0.67 16.9 3.459 18 1.97 --
205.99 0.668 8.89 1.19 -- -3.58 -- -1.62 0.574 -- 45.48 549 3.94 --
206.86 0.674 8.95 1.21 3.37 -- 1.66 -- 0.612 18.2 -- -- -- --
213.57 0.684 8.94 1.19 3.38 -- -- -- 0.618 18.2 -- -- -- --
211.61 0.678 8.87 1.19 -- -3.47 -- -- 0.605 -- 74.53 529 3.97 --
207.96 0.675 8.95 -- 4.32 1.78 -- -- 0.545 16.8 5.768 16 2.08 --
806.14 1.33 8.88 1.1 -- -- -- -- 0.543 -- -- -- -- --
251.11 0.741 8.97 -- 3.36 -- -- -- 0.485 18.2 -- -- -- --
248.9 0.735 8.89 -- -- -3.46 -- -- 0.506 -- 74.9 511 3.77 --
838 1.35 8.91 -- -- -- -- -- 0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.97 radiation 1.0 30 < th dose independent sin 8 NA
2 166.71 temperature 10.0 10 > th dose dependent rect. 8 21
4 166.80 radiation 1.0 30 > th dose independent sin 8 NA
7 167.09 radiation 10.0 10 < th dose dependent sin 9 NA
14 168.57 radiation 1.0 30 > th dose independent rect. 5 3
50 171.24 humidity 70.0 90 > th dose dependent rect. 23 5
67 171.73 radiation 1.0 30 < th dose independent rect. 23 7
68 171.74 radiation 1.0 30 < th dose independent rect. 23 15
71 171.78 temperature 20.0 270 > th dose independent rect. 23 3
73 171.81 radiation 1.0 90 < th dose dependent rect. 23 17
90 172.33 radiation 1.0 30 < th dose independent rect. 23 13
98 172.39 humidity 60.0 270 > th dose dependent rect. 21 6
141 173.08 temperature 20.0 90 > th dose independent rect. 23 6
152 173.26 temperature 20.0 10 > th dose independent rect. 1 4
171 173.61 radiation 1.0 30 < th dose dependent rect. 23 7
173 173.67 radiation 1.0 90 < th dose dependent rect. 23 11
210 174.03 precipitation 0.1 270 < th dose independent rect. 17 14
211 174.03 precipitation 0.1 270 < th dose dependent rect. 17 14
220 174.19 temperature 20.0 270 > th dose independent rect. 22 17
222 174.25 atmosphere 1000.0 270 > th dose independent rect. 23 3
244 174.48 wind 5.0 30 < th dose independent rect. 5 3
245 174.52 humidity 80.0 270 > th dose independent rect. 23 3
253 174.66 wind 9.0 270 < th dose independent rect. 7 10
257 174.69 temperature 10.0 10 > th dose dependent rect. 23 6
263 174.73 atmosphere 1000.0 90 > th dose independent rect. 23 6
266 174.85 temperature 20.0 90 > th dose independent rect. 8 21
267 174.88 humidity 80.0 270 > th dose independent rect. 22 5
278 175.11 temperature 15.0 270 > th dose independent rect. 7 10
298 175.22 radiation 1.0 90 > th dose dependent rect. 4 3
320 175.40 temperature 10.0 270 > th dose dependent rect. 22 16
331 175.63 precipitation 0.1 270 < th dose independent rect. 3 18
332 175.63 precipitation 0.1 270 < th dose dependent rect. 3 18
333 175.64 temperature 20.0 10 > th dose independent rect. 23 6
334 175.64 temperature 10.0 270 > th dose dependent rect. 23 3
338 175.66 wind 9.0 10 < th dose independent rect. 8 21
344 175.78 precipitation 0.1 10 < th dose independent rect. 5 3
346 175.78 precipitation 0.1 10 < th dose dependent rect. 5 3
347 175.82 atmosphere 1000.0 10 > th dose independent rect. 23 6
348 175.82 precipitation 0.1 270 < th dose independent rect. 2 21
351 175.82 precipitation 0.1 270 < th dose dependent rect. 2 21
365 175.92 humidity 50.0 270 > th dose independent rect. 17 14
368 175.93 precipitation 0.1 270 < th dose independent rect. 7 10
369 175.93 precipitation 0.1 270 < th dose dependent rect. 7 10
372 175.97 temperature 20.0 10 > th dose independent rect. 8 21
376 176.04 wind 9.0 90 < th dose dependent rect. 5 3
381 176.06 atmosphere 1015.0 270 < th dose independent rect. 7 10
382 176.06 temperature 10.0 270 > th dose independent rect. 17 14
383 176.06 radiation 40.0 270 < th dose independent rect. 17 14
389 176.12 temperature 10.0 30 > th dose independent rect. 5 3
391 176.12 temperature 30.0 30 < th dose independent rect. 5 3
392 176.12 humidity 50.0 30 > th dose independent rect. 5 3
394 176.12 atmosphere 995.0 30 > th dose independent rect. 5 3
395 176.12 atmosphere 1015.0 30 < th dose independent rect. 5 3
396 176.12 temperature 10.0 30 > th dose independent rect. 8 21
401 176.19 temperature 10.0 90 > th dose independent rect. 23 6
402 176.19 temperature 30.0 90 < th dose independent rect. 23 6
403 176.19 humidity 50.0 90 > th dose independent rect. 23 6
410 176.19 temperature 10.0 90 > th dose independent rect. 5 18
412 176.20 wind 9.0 90 < th dose independent rect. 23 6
425 176.23 wind 9.0 270 < th dose dependent rect. 23 3
429 176.27 humidity 80.0 10 > th dose independent rect. 23 6
442 176.46 wind 9.0 270 < th dose independent rect. 17 14
445 176.47 wind 9.0 10 < th dose dependent rect. 5 3
452 176.54 radiation 40.0 30 < th dose independent rect. 5 3
478 176.73 temperature 10.0 270 > th dose independent rect. 23 3
479 176.73 temperature 30.0 270 < th dose independent rect. 23 3
480 176.73 humidity 50.0 270 > th dose independent rect. 23 3
484 176.73 radiation 1.0 270 < th dose independent rect. 23 3
489 176.73 temperature 10.0 270 > th dose independent rect. 2 21
490 176.73 radiation 1.0 270 < th dose dependent rect. 23 3
506 176.76 atmosphere 1015.0 90 < th dose independent rect. 5 18
507 176.77 wind 9.0 270 < th dose independent rect. 23 3
511 176.83 precipitation 0.1 270 < th dose independent rect. 23 3
512 176.83 precipitation 0.1 270 < th dose dependent rect. 23 3
518 176.91 atmosphere 995.0 270 > th dose independent rect. 17 14
525 176.96 temperature 10.0 10 > th dose dependent rect. 5 3
526 176.96 temperature 10.0 270 > th dose dependent rect. 7 9
527 176.96 temperature 30.0 90 < th dose dependent rect. 4 19
560 177.18 temperature 10.0 270 > th dose independent rect. 3 19
599 177.35 precipitation 0.1 270 < th dose independent rect. 22 5
600 177.35 precipitation 0.1 270 < th dose dependent rect. 22 5
629 177.43 wind 9.0 10 < th dose independent rect. 23 6
630 177.43 temperature 10.0 10 > th dose independent rect. 23 6
631 177.43 temperature 30.0 10 < th dose independent rect. 23 6
632 177.43 humidity 50.0 10 > th dose independent rect. 23 6
641 177.43 temperature 10.0 10 > th dose independent rect. 5 18
643 177.43 atmosphere 1015.0 10 < th dose independent rect. 5 18
644 177.43 radiation 30.0 10 < th dose dependent rect. 23 6
651 177.46 precipitation 0.1 10 < th dose independent rect. 5 18
653 177.46 radiation 40.0 270 < th dose dependent rect. 17 14
654 177.46 precipitation 0.1 10 < th dose dependent rect. 5 18
656 177.47 atmosphere 1000.0 10 > th dose dependent rect. 5 3
658 177.50 wind 9.0 90 < th dose independent rect. 5 18
667 177.58 wind 9.0 270 < th dose independent rect. 6 22
697 177.71 atmosphere 1015.0 270 < th dose independent rect. 3 18
746 177.87 wind 5.0 270 < th dose independent rect. 3 4
747 177.87 precipitation 0.1 90 < th dose independent rect. 5 18
748 177.87 precipitation 0.1 90 < th dose dependent rect. 5 18
777 178.09 atmosphere 1015.0 270 < th dose independent rect. 23 3
800 178.25 wind 9.0 270 < th dose dependent rect. 21 6
829 178.44 atmosphere 995.0 30 > th dose independent rect. 8 21
841 178.52 precipitation 0.1 30 < th dose independent rect. 8 21
843 178.52 precipitation 0.1 30 < th dose dependent rect. 8 21
852 178.60 temperature 30.0 270 < th dose dependent rect. 3 6
853 178.60 radiation 1.0 30 < th dose dependent rect. 1 15
857 178.64 atmosphere 1015.0 90 < th dose independent rect. 23 6
858 178.64 radiation 1.0 30 < th dose independent rect. 1 15
859 178.66 wind 9.0 270 < th dose independent rect. 2 21
914 178.75 temperature 10.0 270 > th dose independent rect. 6 22
921 178.79 humidity 90.0 10 < th dose independent rect. 5 3
923 178.81 temperature 30.0 270 < th dose dependent rect. 2 19
928 178.83 atmosphere 1015.0 30 < th dose independent rect. 8 21
932 178.85 wind 9.0 10 < th dose dependent rect. 23 6
952 178.89 precipitation 0.1 270 < th dose independent rect. 3 4
954 178.89 precipitation 0.1 270 < th dose dependent rect. 3 4
969 178.97 atmosphere 995.0 270 > th dose dependent rect. 23 3
999 179.05 temperature 15.0 10 > th dose dependent rect. 1 4