Os01g0549400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA helicase-like protein DB10.
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Os01g0549400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA helicase-like protein DB10.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.99 | 0.215 | 12.2 | 0.666 | 0.0121 | 0.516 | 0.37 | 0.793 | 0.329 | 17.3 | 20.3 | 1371 | -- | -- |
| 21.95 | 0.218 | 12.2 | 0.542 | 0.00912 | 0.36 | 0.337 | -- | 0.295 | 17.1 | 20.9 | 2630 | -- | -- |
| 21.18 | 0.214 | 12.2 | 0.653 | 0.0471 | 0.501 | -- | 0.73 | 0.327 | 22.1 | 20.41 | 1411 | -- | -- |
| 22.09 | 0.219 | 12.2 | 0.477 | 0.0471 | 0.399 | -- | -- | 0.281 | 20.8 | 20.5 | 2672 | -- | -- |
| 21.31 | 0.215 | 12.2 | 0.661 | -- | 0.497 | -- | 0.735 | 0.327 | -- | 20.51 | 1376 | -- | -- |
| 25.54 | 0.237 | 12.2 | 0.697 | 0.00892 | -- | 0.396 | -- | 0.389 | 17.7 | -- | -- | -- | -- |
| 25.72 | 0.237 | 12.2 | 0.693 | 0.0585 | -- | -- | -- | 0.39 | 22.9 | -- | -- | -- | -- |
| 22.2 | 0.219 | 12.2 | 0.476 | -- | 0.401 | -- | -- | 0.281 | -- | 20.6 | 2585 | -- | -- |
| 25.43 | 0.235 | 12.2 | -- | 0.0515 | 0.571 | -- | -- | 0.176 | 22.5 | 18.4 | 47520 | -- | -- |
| 25.93 | 0.238 | 12.2 | 0.695 | -- | -- | -- | -- | 0.39 | -- | -- | -- | -- | -- |
| 38.39 | 0.29 | 12.2 | -- | 0.0653 | -- | -- | -- | 0.313 | 23.6 | -- | -- | -- | -- |
| 25.59 | 0.236 | 12.2 | -- | -- | 0.573 | -- | -- | 0.176 | -- | 18.44 | 47520 | -- | -- |
| 38.66 | 0.29 | 12.2 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.81 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 5 | 19.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 6 | 20.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 8 | 20.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 12 | 20.09 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 17 | 20.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 135 | 20.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 156 | 20.90 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 191 | 21.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 193 | 21.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 203 | 21.08 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 229 | 21.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 236 | 21.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 264 | 21.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 275 | 21.12 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 13 |
| 301 | 21.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 22 |
| 304 | 21.13 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 306 | 21.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 336 | 21.14 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 356 | 21.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 384 | 21.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 385 | 21.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 413 | 21.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 418 | 21.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 469 | 21.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 491 | 21.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 495 | 21.20 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 532 | 21.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 534 | 21.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 551 | 21.22 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 644 | 21.29 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 666 | 21.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 703 | 21.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 707 | 21.34 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 779 | 21.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 824 | 21.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 857 | 21.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 868 | 21.44 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 12 |
| 909 | 21.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 932 | 21.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 9 |
| 938 | 21.49 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 983 | 21.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |