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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0535100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Helicase pitchoune (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0167) R2 : 0.00553
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0561 (0.0352) R2dN8 : 0.00714 R2N8 : 0.00553
σ : 0.315
deviance : 45.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.13 0.309 3.02 0.207 0.0323 0.298 -0.482 -0.606 0.142 23.9 30.67 710 -- --
43.45 0.307 3.04 0.103 0.0543 0.313 -0.407 -- 0.124 0.236 29.5 706 -- --
43.73 0.31 3.02 0.217 0.0731 0.222 -- -0.831 0.135 10.5 30.67 710 -- --
44.09 0.309 3.03 0.113 0.0377 0.301 -- -- 0.118 0.551 30.07 730 -- --
43.88 0.309 3.02 0.222 -- 0.278 -- -0.938 0.133 -- 43.42 232 -- --
44.79 0.314 3.05 0.0177 0.0095 -- 0.396 -- 0.058 12.1 -- -- -- --
45.27 0.315 3.04 0.0315 0.0617 -- -- -- 0.0585 6.59 -- -- -- --
44.14 0.309 3.03 0.105 -- 0.276 -- -- 0.116 -- 29.17 566 -- --
44.39 0.31 3.04 -- 0.0319 0.268 -- -- 0.0979 0.446 30.5 709 -- --
45.47 0.315 3.05 0.033 -- -- -- -- 0.0597 -- -- -- -- --
45.3 0.315 3.05 -- 0.0621 -- -- -- 0.055 6.56 -- -- -- --
44.4 0.31 3.04 -- -- 0.241 -- -- 0.0979 -- 29.42 504 -- --
45.5 0.315 3.05 -- -- -- -- -- 0.0561 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.13 temperature 20.0 10 > th dose dependent rect. 2 1
2 41.14 humidity 80.0 30 > th dose dependent rect. 2 1
3 41.15 humidity 80.0 10 > th dose independent rect. 2 1
9 41.19 wind 3.0 10 < th dose dependent rect. 2 1
11 41.20 temperature 15.0 10 > th dose independent rect. 3 23
12 41.21 temperature 20.0 10 > th dose independent rect. 2 1
14 41.21 atmosphere 1015.0 30 < th dose dependent rect. 2 1
27 41.26 wind 3.0 30 < th dose independent rect. 2 1
31 41.26 temperature 10.0 30 > th dose independent rect. 2 1
33 41.26 temperature 30.0 30 < th dose independent rect. 2 1
34 41.26 humidity 50.0 30 > th dose independent rect. 2 1
37 41.26 atmosphere 995.0 30 > th dose independent rect. 2 1
38 41.26 atmosphere 1010.0 30 < th dose independent rect. 2 1
40 41.26 radiation 1.0 30 < th dose independent rect. 2 1
45 41.26 precipitation 0.1 30 < th dose independent rect. 2 1
47 41.26 radiation 1.0 30 < th dose dependent rect. 2 1
52 41.26 precipitation 0.1 30 < th dose dependent rect. 2 1
60 41.31 atmosphere 995.0 30 > th dose dependent rect. 2 1
69 41.38 temperature 30.0 30 < th dose dependent rect. 2 1
95 41.43 wind 1.0 30 > th dose independent rect. 2 1
104 41.60 wind 9.0 30 < th dose independent rect. 3 23
110 42.15 temperature 10.0 30 > th dose dependent rect. 3 23
120 42.56 atmosphere 995.0 10 > th dose independent rect. 3 23
127 42.61 atmosphere 1010.0 10 < th dose independent rect. 3 23
128 42.65 temperature 15.0 720 > th dose independent rect. 15 8
131 42.72 temperature 15.0 1440 > th dose independent rect. 13 8
133 42.75 wind 3.0 43200 < th dose independent rect. 10 1
138 42.76 temperature 15.0 720 > th dose independent rect. 11 16
139 42.78 temperature 15.0 720 > th dose independent rect. 8 16
142 42.83 radiation 1.0 1440 < th dose dependent rect. 6 3
143 42.84 wind 3.0 43200 > th dose independent rect. 10 1
146 42.86 humidity 80.0 43200 < th dose independent rect. 8 5
147 42.86 temperature 10.0 1440 > th dose dependent rect. 18 1
151 42.86 radiation 1.0 1440 < th dose dependent rect. 5 5
152 42.87 radiation 1.0 14400 < th dose independent rect. 3 3
159 42.87 radiation 1.0 1440 < th dose dependent rect. 7 1
160 42.87 temperature 20.0 1440 > th dose dependent rect. 18 4
162 42.87 humidity 90.0 43200 > th dose dependent rect. 12 7
165 42.87 temperature 10.0 720 > th dose dependent rect. 19 20
166 42.88 radiation 1.0 14400 > th dose independent rect. 5 1
169 42.88 humidity 90.0 43200 < th dose independent rect. 12 3
201 42.88 humidity 90.0 43200 > th dose dependent rect. 18 1
203 42.88 temperature 10.0 1440 > th dose dependent rect. 18 4
204 42.88 humidity 90.0 43200 > th dose dependent rect. 12 4
210 42.89 temperature 25.0 270 > th dose independent rect. 1 1
218 42.89 wind 5.0 43200 < th dose dependent rect. 10 1
219 42.89 temperature 20.0 1440 > th dose dependent rect. 19 1
223 42.89 temperature 30.0 1440 < th dose dependent rect. 18 4
228 42.89 humidity 70.0 43200 > th dose dependent rect. 8 11
233 42.90 humidity 90.0 43200 > th dose independent rect. 12 4
238 42.90 temperature 30.0 1440 < th dose dependent rect. 18 1
239 42.90 temperature 30.0 1440 < th dose dependent rect. 21 1
245 42.90 temperature 25.0 1440 > th dose dependent rect. 17 16
250 42.91 temperature 10.0 1440 > th dose dependent rect. 21 1
265 42.92 humidity 90.0 43200 > th dose independent rect. 13 1
268 42.92 temperature 20.0 1440 > th dose dependent rect. 21 1
273 42.92 temperature 25.0 1440 > th dose dependent rect. 4 4
286 42.92 temperature 15.0 10 > th dose dependent rect. 12 23
287 42.93 humidity 80.0 43200 < th dose independent rect. 9 3
288 42.93 radiation 1.0 43200 > th dose independent rect. 13 4
289 42.93 radiation 1.0 43200 > th dose independent rect. 11 6
290 42.93 radiation 1.0 43200 < th dose independent rect. 11 6
307 42.93 humidity 70.0 43200 > th dose dependent rect. 8 6
311 42.93 humidity 70.0 43200 > th dose dependent rect. 11 9
315 42.93 temperature 20.0 720 > th dose dependent rect. 19 20
319 42.94 radiation 1.0 43200 < th dose independent rect. 13 4
320 42.94 humidity 80.0 43200 > th dose independent rect. 8 5
323 42.94 humidity 90.0 43200 > th dose independent rect. 12 7
405 42.97 radiation 1.0 43200 > th dose independent rect. 11 19
418 42.97 radiation 1.0 43200 < th dose dependent rect. 11 6
427 42.98 temperature 20.0 43200 < th dose independent rect. 12 1
428 42.98 wind 5.0 43200 < th dose independent rect. 20 2
431 42.98 temperature 20.0 43200 > th dose independent rect. 13 5
442 42.98 humidity 80.0 43200 < th dose independent rect. 7 13
446 42.98 temperature 15.0 270 > th dose independent rect. 17 23
454 42.98 radiation 1.0 43200 < th dose dependent rect. 13 4
461 42.98 humidity 90.0 1440 > th dose dependent rect. 6 10
465 42.98 temperature 10.0 720 > th dose dependent rect. 3 21
468 42.99 temperature 25.0 43200 > th dose independent rect. 12 1
469 42.99 radiation 1.0 1440 > th dose independent rect. 12 1
474 42.99 temperature 20.0 43200 > th dose independent rect. 15 3
499 42.99 radiation 1.0 43200 < th dose independent rect. 11 20
509 42.99 radiation 1.0 1440 < th dose dependent rect. 3 7
523 43.00 temperature 20.0 43200 > th dose independent rect. 17 1
525 43.00 humidity 90.0 43200 > th dose independent rect. 15 1
536 43.00 temperature 20.0 43200 < th dose independent rect. 12 6
538 43.00 radiation 30.0 4320 < th dose independent rect. 21 10
540 43.00 humidity 80.0 43200 > th dose independent rect. 7 14
544 43.00 radiation 1.0 43200 < th dose independent rect. 13 18
547 43.00 radiation 1.0 43200 < th dose dependent rect. 14 1
578 43.01 temperature 20.0 43200 < th dose independent rect. 17 1
580 43.01 precipitation 0.1 14400 > th dose independent rect. 2 1
581 43.01 wind 5.0 43200 > th dose independent rect. 20 2
587 43.01 radiation 1.0 43200 > th dose independent rect. 11 2
588 43.01 radiation 1.0 43200 < th dose independent rect. 11 2
589 43.01 temperature 20.0 43200 < th dose independent rect. 15 3
623 43.01 wind 3.0 43200 > th dose dependent rect. 20 2
624 43.01 radiation 1.0 43200 < th dose dependent rect. 11 2
677 43.02 radiation 1.0 1440 < th dose independent rect. 6 7
702 43.02 precipitation 0.1 30 < th dose independent rect. 3 23
726 43.02 humidity 90.0 14400 > th dose dependent rect. 9 19
731 43.02 precipitation 0.1 30 < th dose dependent rect. 3 23
733 43.03 radiation 1.0 43200 > th dose independent rect. 16 1
734 43.03 radiation 1.0 43200 < th dose independent rect. 16 1
735 43.03 temperature 15.0 1440 > th dose independent rect. 12 2
742 43.03 temperature 25.0 43200 > th dose independent rect. 10 4
743 43.03 temperature 25.0 43200 < th dose independent rect. 10 4
745 43.03 radiation 1.0 1440 > th dose independent rect. 6 4
746 43.03 radiation 1.0 1440 < th dose independent rect. 6 4
750 43.03 radiation 30.0 4320 < th dose independent rect. 2 6
756 43.03 radiation 1.0 1440 > th dose independent rect. 6 7
771 43.03 radiation 1.0 43200 > th dose independent rect. 16 15
782 43.03 precipitation 0.1 14400 > th dose dependent rect. 2 1
799 43.03 humidity 90.0 14400 > th dose dependent rect. 10 17
832 43.04 temperature 25.0 43200 < th dose independent rect. 3 13
836 43.04 temperature 25.0 43200 > th dose independent rect. 2 15
838 43.04 temperature 15.0 1440 > th dose independent rect. 4 17
844 43.04 temperature 20.0 43200 > th dose dependent rect. 13 1
881 43.05 radiation 30.0 4320 < th dose independent rect. 5 3
905 43.05 temperature 25.0 43200 < th dose independent rect. 5 10
908 43.05 temperature 25.0 43200 > th dose independent rect. 4 11
964 43.05 temperature 25.0 1440 > th dose dependent sin 11 NA
965 43.05 radiation 1.0 1440 < th dose dependent sin 7 NA
968 43.05 temperature 20.0 43200 > th dose dependent rect. 15 1
970 43.05 humidity 70.0 43200 > th dose dependent rect. 15 1