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Os01g0618400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA helicase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0307) R2 : 0.835
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.94 (0.105) R2dC : 0.221 R2C : 0.521
β3 : -2.93 (0.153) R2dE : 0.247 R2E : 0.571
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.537 (0.0657) R2dN8 : 0.0329 R2N8 : 0.0613
σ : 0.566
deviance : 147.75
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C
peak time of C : 18.7
E
wheather : temperature
threshold : 14.32
memory length : 205
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.6
open length of G : 3.58

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.35 0.559 12.5 0.419 1.79 -2.94 -1.28 -1.08 -0.512 18.8 13.8 242 3.12 3.93
140.86 0.553 12.5 0.475 1.88 -2.85 -1.14 -- -0.498 18.7 13.11 217 3.38 3.85
142.5 0.556 12.5 0.496 1.84 -2.88 -- 0.0717 -0.523 18.7 12.95 219 3.35 3.9
141.76 0.555 12.5 0.495 1.89 -2.94 -- -- -0.484 18.7 14.31 212 3.48 3.75
237.84 0.718 12.4 0.894 -- -3.56 -- 0.873 -0.455 -- 8.181 130 3.33 5.34
258.81 0.754 12.6 0.391 3.29 -- -0.996 -- -0.809 18.7 -- -- -- --
261.32 0.757 12.6 0.407 3.28 -- -- -- -0.812 18.7 -- -- -- --
175.87 0.618 12.4 0.392 -- -4 -- -- -0.524 -- 2.33 361 1.45 5.42
147.75 0.566 12.5 -- 1.94 -2.93 -- -- -0.537 18.7 14.32 205 3.6 3.58
823.68 1.34 12.5 0.331 -- -- -- -- -0.877 -- -- -- -- --
265.69 0.762 12.6 -- 3.28 -- -- -- -0.857 18.7 -- -- -- --
180.73 0.626 12.4 -- -- -4.06 -- -- -0.537 -- 1.437 356 1.38 5.68
826.57 1.34 12.5 -- -- -- -- -- -0.913 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.42 temperature 15.0 270 > th dose dependent rect. 3 4
3 155.12 temperature 15.0 270 > th dose dependent rect. 4 2
6 155.88 wind 5.0 270 < th dose independent rect. 3 4
7 157.53 wind 9.0 270 < th dose independent rect. 7 20
14 159.09 precipitation 0.1 270 < th dose independent rect. 3 4
15 159.09 precipitation 0.1 270 < th dose dependent rect. 3 4
17 159.44 radiation 10.0 270 < th dose independent rect. 3 4
18 159.72 wind 9.0 270 < th dose dependent rect. 3 4
20 159.92 precipitation 0.1 270 < th dose independent rect. 7 20
21 159.92 precipitation 0.1 270 < th dose dependent rect. 7 20
24 160.10 temperature 10.0 270 > th dose independent rect. 3 4
26 160.10 temperature 30.0 270 < th dose independent rect. 3 4
27 160.10 humidity 50.0 270 > th dose independent rect. 3 4
29 160.10 atmosphere 995.0 270 > th dose independent rect. 3 4
30 160.10 atmosphere 1015.0 270 < th dose independent rect. 3 4
31 160.10 radiation 40.0 270 < th dose independent rect. 3 4
32 160.10 temperature 10.0 270 > th dose independent rect. 7 20
40 161.06 radiation 40.0 270 < th dose dependent rect. 3 4
47 162.24 temperature 20.0 10 > th dose dependent rect. 5 3
57 164.68 radiation 1.0 90 > th dose independent rect. 18 14
59 165.23 radiation 1.0 90 > th dose independent rect. 5 3
73 165.47 humidity 50.0 270 > th dose dependent rect. 3 4
97 168.62 atmosphere 995.0 270 > th dose dependent rect. 3 4
100 169.00 radiation 1.0 90 < th dose dependent sin 11 NA
102 169.02 temperature 20.0 10 > th dose independent rect. 5 4
104 169.45 radiation 1.0 90 > th dose independent sin 11 NA
109 169.65 radiation 1.0 90 < th dose independent sin 11 NA
140 170.78 atmosphere 995.0 270 > th dose independent rect. 7 20
190 171.98 precipitation 0.1 270 < th dose independent rect. 2 6
191 171.98 precipitation 0.1 270 < th dose dependent rect. 2 6
206 172.69 wind 1.0 270 > th dose independent rect. 3 4
275 173.97 wind 1.0 270 > th dose independent rect. 7 20
314 174.90 radiation 1.0 90 > th dose dependent rect. 5 2
317 174.99 radiation 1.0 90 > th dose dependent rect. 18 13
325 175.36 wind 9.0 270 < th dose independent rect. 7 8
326 175.38 radiation 30.0 270 < th dose independent rect. 15 16
328 175.45 humidity 90.0 10 < th dose independent rect. 6 3
349 175.83 temperature 10.0 270 > th dose dependent rect. 7 7
355 175.95 wind 1.0 90 > th dose independent rect. 6 1
379 176.43 atmosphere 1005.0 270 > th dose independent rect. 3 4
380 176.43 precipitation 0.1 270 < th dose independent rect. 7 8
381 176.43 precipitation 0.1 270 < th dose dependent rect. 7 8
382 176.44 wind 5.0 90 < th dose independent rect. 6 1
390 176.69 temperature 10.0 90 > th dose independent rect. 6 1
392 176.69 temperature 30.0 90 < th dose independent rect. 6 1
393 176.69 humidity 50.0 90 > th dose independent rect. 6 1
395 176.69 atmosphere 995.0 90 > th dose independent rect. 6 1
396 176.69 atmosphere 1015.0 90 < th dose independent rect. 6 1
397 176.69 radiation 40.0 90 < th dose independent rect. 6 1
400 176.70 wind 3.0 10 < th dose independent rect. 6 3
401 176.71 precipitation 0.1 90 < th dose independent rect. 6 1
402 176.71 precipitation 0.1 90 < th dose dependent rect. 6 1
412 176.91 radiation 40.0 270 < th dose dependent rect. 15 16
413 176.95 temperature 10.0 270 > th dose independent rect. 7 8
414 176.95 atmosphere 1015.0 270 < th dose independent rect. 7 8
415 176.95 temperature 10.0 270 > th dose independent rect. 15 16
423 177.12 wind 9.0 90 < th dose dependent rect. 6 1
430 177.36 humidity 90.0 90 < th dose independent rect. 6 1
435 177.53 atmosphere 995.0 270 > th dose independent rect. 7 8
436 177.59 wind 7.0 10 < th dose dependent rect. 6 3
456 178.00 wind 7.0 270 < th dose independent rect. 19 8
462 178.09 radiation 1.0 270 > th dose independent rect. 7 8
473 178.28 humidity 50.0 270 > th dose independent rect. 7 20
500 178.69 wind 1.0 270 > th dose independent rect. 8 18
521 178.82 precipitation 0.1 270 < th dose independent rect. 19 8
523 178.82 precipitation 0.1 270 < th dose dependent rect. 19 8
531 178.95 wind 9.0 270 < th dose independent rect. 15 16
560 179.48 temperature 10.0 270 > th dose independent rect. 19 8
561 179.48 temperature 30.0 270 < th dose independent rect. 19 8
562 179.48 humidity 50.0 270 > th dose independent rect. 19 8
563 179.48 atmosphere 995.0 270 > th dose independent rect. 19 8
564 179.48 radiation 1.0 270 < th dose independent rect. 19 8
569 179.48 temperature 10.0 270 > th dose independent rect. 3 16
570 179.48 atmosphere 1015.0 270 < th dose independent rect. 3 16
571 179.48 radiation 1.0 270 < th dose dependent rect. 19 8
576 179.50 radiation 40.0 90 < th dose dependent rect. 6 1
578 179.53 atmosphere 995.0 90 > th dose independent rect. 9 19
604 179.74 wind 1.0 270 > th dose independent rect. 7 8
613 179.88 precipitation 0.1 270 < th dose independent rect. 15 16
614 179.88 precipitation 0.1 270 < th dose dependent rect. 15 16
634 180.40 humidity 50.0 90 > th dose dependent rect. 6 1
638 180.53 precipitation 0.1 270 < th dose independent rect. 3 16
639 180.53 precipitation 0.1 270 < th dose dependent rect. 3 16
648 180.76 wind 9.0 10 < th dose independent rect. 9 20
682 181.52 atmosphere 995.0 270 > th dose independent rect. 15 16
752 182.12 radiation 1.0 90 < th dose dependent rect. 21 10
755 182.22 atmosphere 995.0 90 > th dose dependent rect. 6 1
829 182.98 humidity 50.0 270 > th dose independent rect. 7 8
856 183.13 radiation 1.0 90 < th dose independent rect. 21 10
868 183.44 atmosphere 1015.0 90 < th dose dependent rect. 6 1
882 183.60 temperature 10.0 90 > th dose dependent rect. 17 15
900 183.83 wind 9.0 270 < th dose independent rect. 3 16
915 183.95 wind 1.0 90 > th dose independent rect. 5 3
969 184.51 temperature 10.0 10 > th dose dependent rect. 17 16
974 184.62 atmosphere 1005.0 90 > th dose independent rect. 6 1
979 184.69 temperature 10.0 1440 > th dose independent rect. 7 3
982 184.69 atmosphere 995.0 1440 > th dose independent rect. 7 3
983 184.69 atmosphere 1015.0 1440 < th dose independent rect. 7 3
984 184.69 temperature 10.0 1440 > th dose independent rect. 10 21