Os09g0383400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os09g0383400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.47 | 0.306 | 10.9 | 0.472 | 0.307 | 0.798 | -0.203 | 0.746 | -0.367 | 20.5 | 25.82 | 300 | -- | -- |
| 42.57 | 0.304 | 10.9 | 0.391 | 0.301 | 0.872 | -0.179 | -- | -0.38 | 20.5 | 26.1 | 311 | -- | -- |
| 42.58 | 0.304 | 10.9 | 0.466 | 0.307 | 0.798 | -- | 0.635 | -0.369 | 20.4 | 25.96 | 311 | -- | -- |
| 42.67 | 0.304 | 10.9 | 0.397 | 0.304 | 0.864 | -- | -- | -0.38 | 20.5 | 26.09 | 309 | -- | -- |
| 45.65 | 0.315 | 10.9 | 0.459 | -- | 0.944 | -- | 0.802 | -0.383 | -- | 25.6 | 437 | -- | -- |
| 55.31 | 0.349 | 10.9 | 0.535 | 0.608 | -- | 0.267 | -- | -0.349 | 18.6 | -- | -- | -- | -- |
| 55.49 | 0.349 | 10.9 | 0.53 | 0.609 | -- | -- | -- | -0.348 | 18.7 | -- | -- | -- | -- |
| 45.64 | 0.315 | 10.9 | 0.358 | -- | 1.01 | -- | -- | -0.406 | -- | 25.6 | 437 | -- | -- |
| 46.68 | 0.318 | 10.9 | -- | 0.253 | 0.952 | -- | -- | -0.432 | 20.9 | 25.81 | 360 | -- | -- |
| 74.82 | 0.404 | 10.9 | 0.516 | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
| 62.9 | 0.371 | 10.9 | -- | 0.602 | -- | -- | -- | -0.407 | 18.7 | -- | -- | -- | -- |
| 48.94 | 0.326 | 10.9 | -- | -- | 1.06 | -- | -- | -0.457 | -- | 25.4 | 440 | -- | -- |
| 81.85 | 0.422 | 10.9 | -- | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.69 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 10 |
| 2 | 41.74 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 3 | 41.76 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 7 |
| 20 | 41.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 27 | 42.08 | temperature | 30 | 720 | > th | dose independent | sin | 4 | NA |
| 66 | 42.24 | temperature | 25 | 720 | > th | dose dependent | sin | 5 | NA |
| 70 | 42.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 82 | 42.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 89 | 42.42 | temperature | 30 | 720 | < th | dose independent | sin | 23 | NA |
| 93 | 42.44 | humidity | 60 | 720 | < th | dose independent | rect. | 11 | 4 |
| 113 | 42.63 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 23 |
| 119 | 42.68 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 5 |
| 131 | 42.73 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 144 | 42.78 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 149 | 42.81 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 186 | 42.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 198 | 42.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 201 | 42.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 204 | 42.96 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 22 |
| 205 | 42.96 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 209 | 42.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 217 | 42.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 231 | 43.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 251 | 43.06 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 256 | 43.07 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 271 | 43.10 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 295 | 43.21 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 302 | 43.25 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 331 | 43.30 | humidity | 70 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 354 | 43.35 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 378 | 43.37 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 483 | 43.42 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 23 |
| 515 | 43.47 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 528 | 43.51 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 557 | 43.55 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 16 |
| 591 | 43.61 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 627 | 43.72 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 694 | 43.79 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 793 | 43.83 | radiation | 40 | 720 | > th | dose independent | rect. | 14 | 21 |
| 891 | 43.92 | radiation | 40 | 720 | > th | dose independent | rect. | 10 | 1 |
| 913 | 43.96 | humidity | 70 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 918 | 43.96 | radiation | 30 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 936 | 44.00 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 20 |
| 998 | 44.04 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 4 |