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Os03g0669000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA helicase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0156) R2 : 0.473
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.793 (0.0394) R2dC : 0.469 R2C : 0.47
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0502 (0.0329) R2dN8 : 0.00347 R2N8 : 0.00441
σ : 0.295
deviance : 39.76
__
_____
C
peak time of C : 15.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.21 0.245 10.4 0.663 0.771 -0.319 0.417 0.373 0.105 15.8 16.38 1288 -- --
27.44 0.244 10.4 0.651 0.776 -0.318 0.381 -- 0.102 15.9 17.96 1288 -- --
27.64 0.245 10.4 0.641 0.776 -0.315 -- 0.286 0.0944 15.8 18.18 1266 -- --
27.8 0.246 10.4 0.616 0.781 -0.309 -- -- 0.0836 15.8 17.96 1290 -- --
54.06 0.344 10.4 0.528 -- 0.399 -- -0.000956 0.00859 -- 18.18 1266 -- --
30.67 0.26 10.4 0.568 0.804 -- 0.36 -- 0.0118 15.5 -- -- -- --
31.06 0.261 10.4 0.574 0.804 -- -- -- 0.0138 15.4 -- -- -- --
54.05 0.344 10.4 0.527 -- 0.398 -- -- 0.00878 -- 17.96 1290 -- --
36.04 0.28 10.4 -- 0.745 -0.333 -- -- 0.0706 15.7 19.95 15649 -- --
67.38 0.384 10.4 0.54 -- -- -- -- -0.00749 -- -- -- -- --
39.76 0.295 10.5 -- 0.793 -- -- -- -0.0502 15.4 -- -- -- --
61.39 0.366 10.5 -- -- 0.404 -- -- -0.0495 -- 17.96 1290 -- --
75.08 0.404 10.5 -- -- -- -- -- -0.0674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.33 atmosphere 1000.0 90 > th dose independent rect. 19 8
2 25.46 wind 7.0 10 < th dose dependent rect. 3 6
3 25.47 temperature 10.0 270 > th dose dependent rect. 9 1
6 25.57 temperature 10.0 90 > th dose dependent rect. 3 5
10 25.59 temperature 10.0 270 > th dose dependent rect. 6 6
13 25.62 wind 5.0 90 < th dose independent rect. 3 5
15 25.65 temperature 15.0 270 > th dose dependent rect. 3 2
17 25.67 temperature 10.0 10 > th dose dependent rect. 3 6
18 25.68 wind 5.0 270 < th dose independent rect. 1 5
22 25.72 wind 5.0 270 < th dose independent rect. 23 8
23 25.72 atmosphere 1000.0 270 > th dose independent rect. 17 8
28 25.74 wind 5.0 270 < th dose independent rect. 3 2
29 25.74 wind 5.0 10 < th dose independent rect. 3 6
34 25.76 temperature 10.0 90 > th dose dependent rect. 8 6
36 25.78 precipitation 0.1 90 < th dose independent rect. 3 5
37 25.78 radiation 30.0 90 < th dose independent rect. 3 6
38 25.78 precipitation 0.1 90 < th dose dependent rect. 3 5
42 25.80 temperature 10.0 10 > th dose dependent rect. 9 5
43 25.80 wind 9.0 270 < th dose dependent rect. 6 7
44 25.81 temperature 15.0 270 > th dose dependent rect. 1 5
45 25.82 precipitation 0.1 10 < th dose independent rect. 3 6
46 25.82 precipitation 0.1 10 < th dose dependent rect. 3 6
53 25.86 wind 9.0 90 < th dose independent rect. 8 19
58 25.87 precipitation 0.1 270 < th dose independent rect. 3 2
60 25.87 radiation 40.0 90 < th dose independent rect. 3 16
61 25.87 precipitation 0.1 270 < th dose dependent rect. 3 2
63 25.88 precipitation 0.1 270 < th dose independent rect. 13 17
65 25.88 precipitation 0.1 270 < th dose dependent rect. 13 17
74 25.91 temperature 10.0 90 > th dose independent rect. 3 5
76 25.91 temperature 30.0 90 < th dose independent rect. 3 5
77 25.91 humidity 50.0 90 > th dose independent rect. 3 5
79 25.91 atmosphere 995.0 90 > th dose independent rect. 3 5
80 25.91 atmosphere 1015.0 90 < th dose independent rect. 3 5
82 25.91 temperature 10.0 90 > th dose independent rect. 8 19
89 25.93 wind 9.0 270 < th dose dependent rect. 3 2
105 25.97 temperature 25.0 720 > th dose dependent rect. 20 1
117 25.99 wind 9.0 10 < th dose independent rect. 9 18
120 26.00 temperature 20.0 270 > th dose independent rect. 3 2
124 26.01 wind 9.0 270 < th dose independent rect. 6 7
133 26.03 wind 9.0 270 < th dose independent rect. 5 22
137 26.04 temperature 10.0 10 > th dose independent rect. 3 6
139 26.04 temperature 30.0 10 < th dose independent rect. 3 6
140 26.04 humidity 50.0 10 > th dose independent rect. 3 6
143 26.04 atmosphere 995.0 10 > th dose independent rect. 3 6
144 26.04 atmosphere 1015.0 10 < th dose independent rect. 3 6
146 26.04 precipitation 0.1 270 < th dose independent rect. 6 7
147 26.04 temperature 10.0 10 > th dose independent rect. 9 18
149 26.04 precipitation 0.1 270 < th dose dependent rect. 6 7
151 26.05 atmosphere 1015.0 270 < th dose independent rect. 13 17
159 26.06 temperature 10.0 270 > th dose independent rect. 6 7
160 26.06 atmosphere 995.0 270 > th dose independent rect. 6 7
161 26.06 atmosphere 1015.0 270 < th dose independent rect. 6 7
162 26.06 temperature 10.0 270 > th dose independent rect. 13 17
164 26.06 radiation 1.0 270 < th dose dependent rect. 3 2
174 26.07 humidity 50.0 270 > th dose independent rect. 6 7
183 26.08 wind 7.0 270 < th dose independent rect. 13 17
195 26.10 temperature 10.0 270 > th dose independent rect. 3 2
197 26.10 temperature 30.0 270 < th dose independent rect. 3 2
198 26.10 humidity 50.0 270 > th dose independent rect. 3 2
201 26.10 atmosphere 995.0 270 > th dose independent rect. 3 2
202 26.10 atmosphere 1010.0 270 < th dose independent rect. 3 2
204 26.10 radiation 20.0 270 < th dose independent rect. 3 2
209 26.10 temperature 10.0 270 > th dose independent rect. 5 22
210 26.10 radiation 20.0 270 < th dose dependent rect. 3 2
214 26.11 radiation 1.0 270 < th dose independent rect. 3 2
218 26.11 radiation 40.0 10 < th dose independent rect. 3 6
232 26.13 precipitation 0.1 90 < th dose independent rect. 8 19
233 26.13 wind 9.0 270 < th dose dependent rect. 7 3
236 26.13 precipitation 0.1 90 < th dose dependent rect. 8 19
246 26.14 temperature 10.0 270 > th dose dependent rect. 23 8
247 26.15 wind 1.0 270 > th dose independent rect. 3 1
250 26.15 precipitation 0.1 10 < th dose independent rect. 14 19
251 26.15 precipitation 0.1 10 < th dose dependent rect. 14 19
257 26.16 atmosphere 1015.0 10 < th dose independent rect. 14 19
261 26.16 atmosphere 995.0 90 > th dose dependent rect. 19 8
263 26.16 wind 9.0 10 < th dose dependent rect. 14 19
267 26.17 atmosphere 995.0 90 > th dose independent rect. 8 19
269 26.17 radiation 40.0 90 < th dose dependent rect. 3 6
272 26.18 temperature 30.0 720 < th dose independent rect. 16 3
286 26.20 radiation 40.0 90 < th dose independent rect. 3 14
288 26.20 precipitation 0.1 270 < th dose independent rect. 11 19
294 26.20 wind 9.0 270 < th dose dependent rect. 14 16
295 26.20 precipitation 0.1 270 < th dose dependent rect. 11 19
301 26.21 precipitation 0.1 270 < th dose independent rect. 10 23
308 26.21 precipitation 0.1 270 < th dose dependent rect. 10 23
319 26.22 humidity 50.0 270 > th dose dependent rect. 3 2
325 26.23 precipitation 0.1 10 < th dose independent rect. 9 18
326 26.23 wind 9.0 270 < th dose independent rect. 6 19
330 26.23 precipitation 0.1 10 < th dose dependent rect. 9 18
332 26.24 atmosphere 1010.0 270 < th dose independent rect. 1 5
340 26.24 humidity 50.0 90 > th dose dependent rect. 3 5
368 26.27 wind 1.0 30 > th dose independent rect. 9 5
371 26.27 atmosphere 995.0 10 > th dose independent rect. 9 18
376 26.28 precipitation 0.1 90 < th dose independent rect. 8 6
377 26.28 humidity 80.0 720 < th dose dependent rect. 20 1
384 26.28 precipitation 0.1 90 < th dose dependent rect. 8 6
398 26.29 radiation 20.0 270 < th dose independent rect. 1 5
406 26.29 temperature 10.0 270 > th dose independent rect. 6 19
425 26.30 temperature 10.0 10 > th dose independent rect. 9 5
427 26.30 atmosphere 995.0 10 > th dose independent rect. 9 5
428 26.30 atmosphere 1015.0 10 < th dose independent rect. 9 5
430 26.30 precipitation 0.1 10 < th dose independent rect. 9 5
434 26.30 temperature 10.0 10 > th dose independent rect. 14 19
435 26.30 atmosphere 1015.0 270 < th dose independent rect. 11 19
442 26.30 precipitation 0.1 10 < th dose dependent rect. 9 5
460 26.32 wind 9.0 10 < th dose independent rect. 9 5
465 26.32 humidity 70.0 90 > th dose independent rect. 3 8
468 26.32 radiation 40.0 270 < th dose dependent rect. 1 5
472 26.32 radiation 40.0 90 < th dose dependent rect. 3 8
477 26.33 wind 9.0 90 < th dose independent rect. 8 6
478 26.33 temperature 10.0 90 > th dose independent rect. 8 6
479 26.33 atmosphere 995.0 90 > th dose independent rect. 8 6
480 26.33 atmosphere 1015.0 90 < th dose independent rect. 8 6
491 26.33 temperature 25.0 720 > th dose dependent rect. 18 11
494 26.34 radiation 1.0 270 > th dose independent rect. 6 7
495 26.34 precipitation 0.1 270 < th dose independent rect. 2 15
501 26.34 temperature 25.0 720 > th dose dependent rect. 18 9
504 26.34 precipitation 0.1 270 < th dose dependent rect. 2 15
505 26.34 wind 9.0 10 < th dose dependent rect. 16 17
508 26.35 humidity 50.0 270 > th dose independent rect. 6 5
509 26.35 precipitation 0.1 270 < th dose independent rect. 6 5
521 26.35 precipitation 0.1 270 < th dose independent rect. 10 21
523 26.35 precipitation 0.1 270 < th dose dependent rect. 6 5
525 26.35 temperature 25.0 720 > th dose dependent rect. 18 6
529 26.35 precipitation 0.1 270 < th dose dependent rect. 10 21
530 26.36 wind 9.0 270 < th dose independent rect. 6 5
531 26.36 temperature 10.0 270 > th dose independent rect. 6 5
532 26.36 atmosphere 995.0 270 > th dose independent rect. 6 5
533 26.36 atmosphere 1015.0 270 < th dose independent rect. 6 5
540 26.36 temperature 10.0 270 > th dose independent rect. 11 19
547 26.36 radiation 40.0 270 < th dose dependent rect. 16 10
548 26.37 wind 9.0 270 < th dose independent rect. 9 1
549 26.37 humidity 50.0 270 > th dose independent rect. 9 1
550 26.37 precipitation 0.1 270 < th dose independent rect. 9 1
560 26.37 atmosphere 1000.0 270 > th dose independent rect. 20 14
564 26.37 precipitation 0.1 270 < th dose dependent rect. 9 1
582 26.38 radiation 1.0 10 > th dose independent rect. 9 5
592 26.39 temperature 10.0 270 > th dose independent rect. 9 1
593 26.39 atmosphere 995.0 270 > th dose independent rect. 9 1
594 26.39 atmosphere 1015.0 270 < th dose independent rect. 9 1
595 26.39 radiation 1.0 270 > th dose independent rect. 9 1
607 26.39 atmosphere 1015.0 270 < th dose independent rect. 11 10
611 26.39 wind 9.0 10 < th dose independent rect. 14 19
612 26.39 temperature 10.0 270 > th dose independent rect. 10 23
628 26.40 humidity 50.0 90 > th dose independent rect. 8 6
630 26.40 temperature 30.0 720 < th dose independent rect. 16 9
641 26.40 radiation 20.0 270 < th dose dependent rect. 1 8
644 26.41 temperature 10.0 1440 > th dose independent rect. 10 5
656 26.41 temperature 10.0 1440 > th dose independent rect. 15 19
674 26.42 humidity 50.0 10 > th dose independent rect. 9 5
682 26.42 temperature 10.0 1440 > th dose independent rect. 3 7
685 26.42 atmosphere 995.0 1440 > th dose independent rect. 3 7
686 26.42 temperature 10.0 1440 > th dose independent rect. 10 17
692 26.42 radiation 40.0 90 < th dose independent rect. 13 19
693 26.42 radiation 40.0 10 < th dose independent rect. 14 19
709 26.43 radiation 40.0 10 < th dose independent rect. 12 21
722 26.44 atmosphere 995.0 270 > th dose independent rect. 13 17
727 26.44 atmosphere 1015.0 90 < th dose dependent rect. 3 5
732 26.45 wind 5.0 270 < th dose independent rect. 7 3
735 26.45 temperature 10.0 270 > th dose independent rect. 17 9
737 26.45 radiation 20.0 270 < th dose independent rect. 17 9
740 26.45 temperature 10.0 270 > th dose independent rect. 2 15
742 26.45 atmosphere 1015.0 270 < th dose independent rect. 2 15
752 26.46 wind 9.0 90 < th dose independent rect. 19 8
753 26.46 temperature 10.0 90 > th dose independent rect. 19 8
754 26.46 temperature 30.0 90 < th dose independent rect. 19 8
755 26.46 humidity 50.0 90 > th dose independent rect. 19 8
758 26.46 radiation 1.0 90 < th dose independent rect. 19 8
763 26.46 wind 9.0 270 < th dose independent rect. 17 9
775 26.46 atmosphere 1015.0 270 < th dose dependent rect. 3 2
781 26.46 humidity 50.0 90 > th dose dependent rect. 19 8
782 26.46 radiation 1.0 90 < th dose dependent rect. 19 8
811 26.48 humidity 90.0 90 < th dose independent rect. 8 6
817 26.48 radiation 40.0 10 < th dose independent rect. 4 15
823 26.48 humidity 60.0 90 > th dose dependent rect. 3 8
825 26.48 humidity 60.0 90 > th dose dependent rect. 3 12
829 26.49 radiation 1.0 270 > th dose independent rect. 6 5
838 26.50 radiation 1.0 270 > th dose independent rect. 7 3
859 26.50 radiation 20.0 270 < th dose dependent rect. 1 10
874 26.51 humidity 50.0 270 > th dose independent rect. 21 14
884 26.51 humidity 50.0 270 > th dose dependent rect. 1 5
887 26.52 temperature 15.0 270 > th dose independent rect. 7 3
913 26.53 humidity 50.0 270 > th dose independent rect. 7 3
914 26.53 precipitation 0.1 270 < th dose independent rect. 7 3
918 26.53 precipitation 0.1 90 < th dose independent rect. 19 8
919 26.53 temperature 10.0 270 > th dose independent rect. 11 10
920 26.53 precipitation 0.1 270 < th dose independent rect. 11 10
921 26.53 temperature 10.0 270 > th dose independent rect. 21 14
923 26.53 wind 9.0 90 < th dose independent rect. 3 16
928 26.53 atmosphere 995.0 10 > th dose independent rect. 14 19
929 26.53 precipitation 0.1 270 < th dose dependent rect. 7 3
934 26.53 precipitation 0.1 90 < th dose dependent rect. 19 8
936 26.53 precipitation 0.1 270 < th dose dependent rect. 11 10
940 26.54 atmosphere 995.0 270 > th dose independent rect. 7 3
941 26.54 atmosphere 1015.0 270 < th dose independent rect. 7 3
949 26.54 temperature 10.0 270 > th dose independent rect. 10 21
976 26.56 wind 1.0 270 > th dose independent rect. 9 1
980 26.56 humidity 90.0 10 < th dose independent rect. 9 5
984 26.56 humidity 50.0 270 > th dose independent rect. 17 9
985 26.56 wind 9.0 270 < th dose independent rect. 21 14