BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0333500 Os09g0333500|AK072827
(128 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0333500 Similar to PDR-like ABC transporter (PDR4 ABC ... 229 4e-61
Os01g0609900 Similar to PDR-like ABC transporter (PDR4 ABC ... 88 1e-18
Os01g0342700 Similar to PDR-like ABC transporter (PDR4 ABC ... 84 2e-17
Os01g0609300 PDR-like ABC transporter (PDR3 ABC transporter) 82 1e-16
Os09g0333000 74 2e-14
Os01g0609200 ABC transporter related domain containing protein 67 2e-12
Os02g0208300 ABC-2 type transporter domain containing protein 65 1e-11
Os08g0384500 Similar to PDR-like ABC transporter (PDR3 ABC ... 63 4e-11
>Os09g0333500 Similar to PDR-like ABC transporter (PDR4 ABC transporter)
Length = 128
Score = 229 bits (584), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 113/128 (88%), Positives = 113/128 (88%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
MVGYEWTCAKFLW GMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL
Sbjct: 1 MVGYEWTCAKFLWYLFFMFFTLSYFTFYGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
Query: 61 IPRIVRIPAFLKYLIVHCSWLNYLTSTNFSNMAPFTTENSSMVEVVLLDVPCCLDTQWIA 120
IPRIVRIPAFLKYLIVHCSWLNYLTSTNFSNMAPFTTENSSMVEVVLLDVPCCLDTQWIA
Sbjct: 61 IPRIVRIPAFLKYLIVHCSWLNYLTSTNFSNMAPFTTENSSMVEVVLLDVPCCLDTQWIA 120
Query: 121 YITVWGCK 128
YITVWGCK
Sbjct: 121 YITVWGCK 128
>Os01g0609900 Similar to PDR-like ABC transporter (PDR4 ABC transporter)
Length = 1388
Score = 88.2 bits (217), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+G+EWT AKFLW GMM GLTPN +++A++S+AFYN+WNLFSG+L
Sbjct: 1239 MIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYL 1298
Query: 61 IPRIVRIPAFLKYLIVHC--SWLNY-LTSTNFSNM 92
IPR +IP + ++ C +W Y L ++ F ++
Sbjct: 1299 IPR-PKIPVWWRWYCWICPVAWTLYGLVASQFGDI 1332
>Os01g0342700 Similar to PDR-like ABC transporter (PDR4 ABC transporter)
Length = 1451
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+G+EWT AKF+W GMM GLTPN +++A++S A YN WNLFSG+L
Sbjct: 1302 MIGFEWTVAKFIWYLFFMYFTLLYFTFFGMMAVGLTPNESIAAIISPAIYNAWNLFSGYL 1361
Query: 61 IPRIVRIPAFLKYLIVHC--SWLNY-LTSTNFSNM 92
IPR +IP + ++ C +W Y L ++ F N+
Sbjct: 1362 IPR-PKIPVWWRWYCWICPVAWTLYGLVASQFGNI 1395
>Os01g0609300 PDR-like ABC transporter (PDR3 ABC transporter)
Length = 1457
Score = 82.0 bits (201), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+G+EWT AKF W GMM GLTPN ++++VS+AFY IWNLFSGF+
Sbjct: 1309 MIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFV 1368
Query: 61 IPRIVRIPAFLKYLIVHC--SWLNY-LTSTNFSNM 92
IPR R+P + ++ C +W Y L + F ++
Sbjct: 1369 IPR-PRVPIWWRWYCWACPVAWTLYGLVVSQFGDI 1402
>Os09g0333000
Length = 239
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+GYEW+ AKF W GMM GLTPN MS VVST FY +WNLFSGFL
Sbjct: 33 MIGYEWSGAKFFWYLFFMYFTLSYYTFYGMMAVGLTPNYNMSTVVSTGFYTMWNLFSGFL 92
Query: 61 IPRIVRIP 68
IP + RIP
Sbjct: 93 IP-LTRIP 99
>Os01g0609200 ABC transporter related domain containing protein
Length = 1444
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+G++WT AKF W GMM GLTP+ ++++VS+AFY IWNLFSGF+
Sbjct: 1296 MIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAVGLTPSYHVASIVSSAFYGIWNLFSGFI 1355
Query: 61 IPRIVRIPAFLKYLIVHC--SWLNY-LTSTNFSN-MAP 94
IPR ++P + ++ C +W Y L ++ F + M P
Sbjct: 1356 IPR-PKVPIWWRWYCWICPVAWTLYGLVASQFGDIMTP 1392
>Os02g0208300 ABC-2 type transporter domain containing protein
Length = 208
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 4/107 (3%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
++G++WT KF W GMM +TPN+ ++A+VSTAFY IWN+F+GFL
Sbjct: 59 LIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFL 118
Query: 61 IPRIVRIPAFLKYLIVHC--SWLNY-LTSTNFSNMAPFTTENSSMVE 104
IPR RIP + ++ C +W Y L ++ + ++ T E+ +V+
Sbjct: 119 IPR-PRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQ 164
>Os08g0384500 Similar to PDR-like ABC transporter (PDR3 ABC transporter)
Length = 732
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 1 MVGYEWTCAKFLWXXXXXXXXXXXXXXXGMMMAGLTPNNAMSAVVSTAFYNIWNLFSGFL 60
M+G+EW KF W GM+ GLTP+ ++++VS+ FY IWNLFSGF+
Sbjct: 583 MIGFEWEAKKFFWYLYFMYFTLLYFTFYGMLAVGLTPSYNIASIVSSFFYGIWNLFSGFV 642
Query: 61 IPR 63
IPR
Sbjct: 643 IPR 645
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.137 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,558,407
Number of extensions: 103403
Number of successful extensions: 318
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 11
Length of query: 128
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 39
Effective length of database: 12,388,755
Effective search space: 483161445
Effective search space used: 483161445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 150 (62.4 bits)