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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0342700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PDR-like ABC transporter (PDR4 ABC transporter).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0341) R2 : 0.357
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.616 (0.0885) R2dC : 0.0689 R2C : -0.00606
β3 : 1.43 (0.19) R2dE : 0.0826 R2E : -0.0267
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.962 (0.0724) R2dN8 : 0.331 R2N8 : 0.2
σ : 0.637
deviance : 186.77
__
_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 17.98
memory length : 4159
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.67 0.64 4.48 0.262 0.618 0.682 -0.0437 -1.91 1.03 18.8 19.16 4132 -- --
186.08 0.635 4.51 0.247 0.615 1.62 0.015 -- 1.05 18.9 18.2 4151 -- --
185.64 0.635 4.49 0.246 0.617 0.756 -- -1.77 1.02 18.9 18.89 4132 -- --
185.9 0.635 4.53 0.224 0.616 1.58 -- -- 1 18.9 18.2 4159 -- --
205.49 0.668 4.49 0.248 -- 1.1 -- -1.15 1.01 -- 18.7 4166 -- --
206.69 0.674 4.57 -0.339 0.639 -- -0.413 -- 0.832 18.4 -- -- -- --
206.98 0.674 4.57 -0.336 0.637 -- -- -- 0.83 18.7 -- -- -- --
205.62 0.668 4.51 0.237 -- 1.63 -- -- 1 -- 18.3 4180 -- --
186.77 0.637 4.54 -- 0.616 1.43 -- -- 0.962 18.9 17.98 4159 -- --
228.2 0.706 4.56 -0.35 -- -- -- -- 0.818 -- -- -- -- --
209.95 0.678 4.56 -- 0.642 -- -- -- 0.868 18.7 -- -- -- --
206.61 0.669 4.52 -- -- 1.46 -- -- 0.957 -- 18.1 4167 -- --
231.43 0.71 4.55 -- -- -- -- -- 0.857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.42 temperature 10.0 10 > th dose dependent rect. 9 19
5 175.43 precipitation 0.1 1440 < th dose independent rect. 10 3
6 175.43 precipitation 0.1 1440 < th dose dependent rect. 10 3
7 175.54 humidity 50.0 14400 > th dose independent rect. 19 10
8 175.80 temperature 10.0 43200 > th dose independent rect. 10 5
15 176.93 temperature 20.0 30 > th dose independent rect. 9 19
23 177.68 temperature 10.0 270 > th dose dependent rect. 7 18
27 177.90 temperature 10.0 270 > th dose dependent rect. 16 10
28 178.10 temperature 20.0 270 > th dose independent rect. 7 18
35 178.73 temperature 15.0 4320 > th dose independent rect. 10 3
40 179.35 temperature 20.0 90 > th dose independent rect. 21 15
47 179.61 temperature 15.0 10 > th dose dependent rect. 7 21
57 180.17 humidity 90.0 270 < th dose independent rect. 9 1
62 180.26 humidity 50.0 14400 > th dose independent rect. 18 15
63 180.33 temperature 10.0 43200 > th dose independent rect. 10 8
65 180.38 wind 3.0 4320 > th dose dependent rect. 23 2
68 180.45 temperature 15.0 10 > th dose dependent rect. 16 12
78 180.66 humidity 90.0 270 < th dose independent rect. 7 4
84 180.76 temperature 20.0 270 > th dose independent rect. 9 1
88 180.78 temperature 15.0 90 > th dose dependent rect. 20 16
94 180.86 temperature 15.0 10 > th dose dependent rect. 20 8
101 181.05 temperature 10.0 720 > th dose dependent rect. 9 10
107 181.25 temperature 15.0 10 > th dose dependent rect. 18 10
112 181.34 temperature 10.0 720 > th dose dependent rect. 7 14
121 181.47 temperature 20.0 270 > th dose independent rect. 7 4
124 181.50 humidity 90.0 10 < th dose dependent rect. 9 5
125 181.53 humidity 80.0 30 < th dose independent rect. 9 5
130 181.60 humidity 90.0 270 < th dose dependent rect. 22 13
147 181.85 temperature 20.0 270 > th dose independent rect. 16 10
154 181.97 temperature 20.0 270 > th dose independent rect. 18 8
166 182.22 wind 9.0 4320 < th dose independent rect. 9 1
172 182.29 temperature 20.0 10 > th dose independent rect. 20 8
175 182.32 temperature 15.0 270 > th dose dependent rect. 18 17
176 182.33 humidity 70.0 14400 > th dose independent rect. 20 10
181 182.40 humidity 50.0 14400 > th dose independent rect. 19 12
191 182.49 temperature 15.0 30 > th dose dependent rect. 9 3
198 182.54 atmosphere 1015.0 10 < th dose dependent rect. 20 17
206 182.64 temperature 15.0 720 > th dose dependent rect. 16 1
210 182.69 wind 5.0 4320 > th dose independent rect. 23 2
212 182.70 temperature 10.0 270 > th dose dependent rect. 9 1
216 182.73 humidity 90.0 90 < th dose independent rect. 9 18
217 182.74 wind 5.0 4320 < th dose independent rect. 23 2
220 182.75 radiation 1.0 270 > th dose independent rect. 9 1
224 182.77 humidity 70.0 14400 < th dose independent rect. 21 1
226 182.77 humidity 70.0 14400 > th dose independent rect. 20 3
235 182.77 humidity 90.0 90 < th dose dependent sin 5 NA
240 182.80 temperature 20.0 10 > th dose independent rect. 9 5
256 182.91 humidity 70.0 30 > th dose dependent rect. 4 14
267 182.98 humidity 70.0 14400 > th dose independent rect. 20 5
269 183.00 humidity 50.0 14400 > th dose independent rect. 5 4
271 183.00 humidity 70.0 14400 < th dose dependent rect. 20 11
283 183.05 atmosphere 1010.0 10 < th dose independent rect. 9 19
293 183.09 humidity 90.0 90 < th dose dependent rect. 7 6
295 183.10 wind 9.0 14400 > th dose independent rect. 19 1
296 183.10 humidity 90.0 270 < th dose dependent rect. 9 1
301 183.13 humidity 50.0 10 > th dose dependent rect. 4 12
311 183.18 humidity 70.0 14400 > th dose independent rect. 20 7
317 183.20 humidity 70.0 14400 < th dose dependent rect. 20 2
326 183.20 humidity 50.0 270 > th dose dependent rect. 2 14
336 183.22 temperature 20.0 720 > th dose independent rect. 16 1
351 183.26 wind 1.0 270 > th dose independent rect. 11 20
352 183.26 temperature 10.0 270 > th dose dependent rect. 7 4
359 183.30 humidity 80.0 90 < th dose independent sin 3 NA
361 183.30 radiation 1.0 270 > th dose independent rect. 7 4
375 183.35 humidity 80.0 10 > th dose independent rect. 4 16
378 183.37 humidity 50.0 14400 > th dose independent rect. 24 9
394 183.45 wind 9.0 14400 > th dose dependent rect. 22 1
396 183.45 humidity 90.0 10 < th dose dependent rect. 7 7
407 183.50 wind 7.0 10 < th dose independent rect. 9 5
408 183.50 temperature 20.0 30 > th dose independent rect. 16 12
418 183.53 wind 9.0 270 < th dose dependent rect. 9 1
421 183.54 atmosphere 1010.0 10 < th dose independent rect. 20 17
422 183.55 humidity 90.0 720 < th dose independent rect. 16 1
429 183.57 humidity 80.0 10 > th dose independent rect. 4 14
463 183.70 temperature 20.0 30 > th dose independent rect. 18 10
483 183.83 radiation 20.0 4320 < th dose independent rect. 17 13
498 183.88 humidity 80.0 90 < th dose independent rect. 3 11
510 183.91 wind 7.0 270 < th dose independent rect. 9 1
531 183.95 wind 9.0 90 < th dose dependent rect. 9 4
535 183.98 atmosphere 1010.0 90 < th dose independent rect. 20 16
537 184.00 humidity 80.0 90 < th dose independent rect. 7 7
542 184.01 temperature 15.0 720 > th dose dependent sin 21 NA
558 184.08 humidity 90.0 270 < th dose independent rect. 23 13
560 184.09 wind 7.0 90 < th dose independent rect. 9 4
570 184.11 humidity 90.0 270 < th dose dependent rect. 5 6
577 184.13 humidity 80.0 43200 < th dose independent rect. 24 15
587 184.15 humidity 80.0 43200 < th dose independent rect. 23 17
601 184.21 humidity 80.0 43200 < th dose independent sin 4 NA
602 184.21 temperature 15.0 4320 > th dose independent rect. 10 6
603 184.21 wind 9.0 14400 > th dose dependent rect. 19 1
616 184.26 humidity 90.0 270 < th dose dependent sin 8 NA
618 184.27 humidity 80.0 90 < th dose independent rect. 5 9
645 184.33 temperature 15.0 720 > th dose dependent rect. 15 4
652 184.34 radiation 1.0 270 < th dose dependent rect. 4 12
677 184.40 humidity 80.0 43200 < th dose dependent rect. 24 8
680 184.41 wind 5.0 10 < th dose independent rect. 14 19
682 184.41 wind 9.0 4320 > th dose dependent rect. 9 1
686 184.42 humidity 60.0 14400 < th dose independent rect. 19 13
689 184.43 humidity 80.0 43200 < th dose independent rect. 1 13
714 184.51 humidity 80.0 43200 < th dose dependent rect. 3 4
750 184.56 wind 7.0 270 < th dose independent rect. 7 4
813 184.69 temperature 15.0 4320 > th dose independent rect. 7 3
817 184.70 wind 5.0 4320 < th dose independent rect. 21 4
821 184.71 atmosphere 1010.0 1440 < th dose independent rect. 9 3
822 184.71 atmosphere 1010.0 10 < th dose independent rect. 22 15
852 184.77 temperature 15.0 14400 > th dose independent rect. 18 3
857 184.78 wind 9.0 14400 > th dose independent rect. 24 2
870 184.80 wind 9.0 270 < th dose dependent rect. 7 4
895 184.87 temperature 20.0 720 > th dose independent rect. 16 3
899 184.87 wind 9.0 14400 > th dose dependent rect. 24 2
919 184.92 temperature 10.0 270 > th dose dependent sin 17 NA
934 184.95 temperature 30.0 720 < th dose dependent rect. 11 3
936 184.96 humidity 80.0 43200 > th dose independent sin 4 NA
944 184.97 temperature 20.0 90 > th dose independent rect. 9 14
945 184.97 radiation 40.0 4320 < th dose independent rect. 16 16
954 184.99 humidity 80.0 270 > th dose independent rect. 2 14
955 184.99 humidity 80.0 43200 < th dose dependent rect. 24 1
970 185.03 wind 9.0 4320 > th dose independent rect. 9 1
978 185.04 humidity 50.0 14400 > th dose independent rect. 22 11