Os08g0384500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PDR-like ABC transporter (PDR3 ABC transporter).
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Os08g0384500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PDR-like ABC transporter (PDR3 ABC transporter).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 401.74 | 0.942 | 7.17 | 0.414 | 0.628 | -1.73 | 0.684 | 0.205 | -0.258 | 20.8 | 78.5 | 955 | 7.48 | -- |
| 401.68 | 0.933 | 7.17 | 0.4 | 0.613 | -1.71 | 0.73 | -- | -0.27 | 20.7 | 78.17 | 948 | 7.14 | -- |
| 403.08 | 0.935 | 7.16 | 0.423 | 0.625 | -1.76 | -- | 0.566 | -0.262 | 20.9 | 78.75 | 951 | 7.39 | -- |
| 403.41 | 0.935 | 7.17 | 0.377 | 0.609 | -1.72 | -- | -- | -0.267 | 20.8 | 78.25 | 947 | 7.1 | -- |
| 418.58 | 0.953 | 7.14 | 0.419 | -- | -1.65 | -- | 0.704 | -0.239 | -- | 79.52 | 1076 | 7.55 | -- |
| 492.31 | 1.04 | 7.13 | 0.188 | 0.675 | -- | 0.793 | -- | -0.0819 | 17.3 | -- | -- | -- | -- |
| 493.81 | 1.04 | 7.12 | 0.188 | 0.68 | -- | -- | -- | -0.078 | 17.1 | -- | -- | -- | -- |
| 418.38 | 0.953 | 7.15 | 0.342 | -- | -1.61 | -- | -- | -0.245 | -- | 79.34 | 1078 | 7.36 | -- |
| 406.95 | 0.94 | 7.18 | -- | 0.616 | -1.71 | -- | -- | -0.294 | 20.9 | 79.56 | 942 | 7.32 | -- |
| 518.07 | 1.06 | 7.12 | 0.163 | -- | -- | -- | -- | -0.0953 | -- | -- | -- | -- | -- |
| 494.74 | 1.04 | 7.13 | -- | 0.677 | -- | -- | -- | -0.0989 | 17.1 | -- | -- | -- | -- |
| 420.94 | 0.956 | 7.15 | -- | -- | -1.6 | -- | -- | -0.224 | -- | 83.91 | 1100 | 8.28 | -- |
| 518.77 | 1.06 | 7.12 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 400.97 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 15 | 404.27 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 16 | 404.42 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 17 | 409.08 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 18 | 410.41 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 37 | 412.23 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 48 | 412.37 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 62 | 412.37 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 63 | 412.53 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 13 |
| 65 | 413.15 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 89 | 413.81 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 92 | 414.01 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 267 | 423.21 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 278 | 423.48 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 15 |
| 358 | 425.75 | humidity | 60 | 1440 | < th | dose dependent | sin | 12 | NA |
| 365 | 426.00 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 370 | 426.20 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 377 | 426.40 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 394 | 426.49 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 395 | 426.50 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 406 | 426.86 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 412 | 427.09 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 417 | 427.17 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 434 | 427.31 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 440 | 427.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 477 | 427.69 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 491 | 427.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 494 | 427.80 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 503 | 427.94 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 518 | 428.12 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 12 |
| 519 | 428.13 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 10 |
| 535 | 428.22 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 551 | 428.39 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 603 | 428.67 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 616 | 428.77 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 636 | 428.95 | humidity | 90 | 720 | > th | dose independent | rect. | 22 | 1 |
| 673 | 429.18 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 675 | 429.20 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 695 | 429.36 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 2 |
| 701 | 429.40 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 733 | 429.61 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 743 | 429.69 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 772 | 429.86 | humidity | 80 | 1440 | < th | dose dependent | sin | 17 | NA |
| 800 | 430.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 803 | 430.02 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 4 |
| 958 | 430.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 991 | 431.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 9 |