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Os01g0609300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PDR-like ABC transporter (PDR3 ABC transporter).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.73 (0.0264) R2 : 0.403
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.596 (0.063) R2dC : 0.116 R2C : 0.0787
β3 : 1.64 (0.141) R2dE : 0.177 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.568 (0.0558) R2dN8 : 0.177 R2N8 : 0.112
σ : 0.496
deviance : 113.24
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C
peak time of C : 0.734
E
wheather : temperature
threshold : 30.13
memory length : 4521
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.92
open length of G : 0.816

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.61 0.494 8.74 -0.331 0.598 1.84 0.307 -1.78 0.54 0.722 30.15 4540 7.73 0.967
110.61 0.49 8.73 -0.275 0.596 1.65 0.316 -- 0.543 0.719 30.1 4467 7.92 0.784
111 0.491 8.74 -0.346 0.598 1.85 -- -1.87 0.538 0.806 30.1 4519 7.75 0.973
111 0.491 8.73 -0.292 0.597 1.66 -- -- 0.538 0.801 30.1 4474 7.93 0.783
133.3 0.538 8.73 -0.298 -- 1.76 -- -1.19 0.538 -- 30.1 4573 7.73 0.975
144.84 0.564 8.75 -0.21 0.592 -- 0.297 -- 0.485 0.725 -- -- -- --
145.2 0.564 8.75 -0.221 0.592 -- -- -- 0.483 0.802 -- -- -- --
133.28 0.538 8.72 -0.271 -- 1.66 -- -- 0.548 -- 30.1 4471 7.88 0.829
113.24 0.496 8.73 -- 0.596 1.64 -- -- 0.568 0.734 30.13 4521 7.92 0.816
167.08 0.604 8.74 -0.2 -- -- -- -- 0.494 -- -- -- -- --
146.49 0.566 8.74 -- 0.588 -- -- -- 0.508 0.785 -- -- -- --
135.19 0.542 8.72 -- -- 1.62 -- -- 0.578 -- 30.13 4484 7.9 0.818
168.13 0.605 8.73 -- -- -- -- -- 0.516 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.48 temperature 30 4320 > th dose dependent rect. 8 1
29 117.57 wind 1 4320 < th dose dependent rect. 6 2
30 117.76 wind 1 1440 < th dose independent rect. 6 2
33 119.35 wind 1 1440 > th dose independent rect. 6 2
37 120.78 temperature 30 4320 > th dose independent rect. 8 1
79 124.38 wind 1 1440 < th dose dependent rect. 6 6
82 125.16 temperature 30 4320 < th dose independent rect. 19 14
83 125.26 temperature 30 4320 < th dose independent rect. 8 1
87 125.63 temperature 30 4320 < th dose independent rect. 1 8
88 125.67 temperature 30 4320 < th dose independent rect. 4 5
134 130.04 radiation 1 720 < th dose independent rect. 9 3
135 130.04 radiation 1 720 < th dose dependent rect. 9 3
136 130.12 radiation 1 270 < th dose independent rect. 8 7
137 130.12 radiation 1 270 < th dose dependent rect. 8 7
182 130.86 wind 5 1440 > th dose independent rect. 15 1
195 131.31 radiation 1 270 < th dose independent rect. 11 4
197 131.31 radiation 1 270 < th dose dependent rect. 11 4
208 131.46 humidity 70 1440 < th dose independent rect. 8 1
226 131.80 wind 5 1440 < th dose independent rect. 15 1
233 131.95 radiation 1 270 < th dose independent rect. 13 2
234 131.95 radiation 1 270 < th dose dependent rect. 13 2
248 132.12 humidity 90 4320 > th dose independent rect. 7 1
255 132.18 humidity 70 1440 > th dose independent rect. 8 1
288 132.49 wind 5 1440 > th dose dependent rect. 15 1
301 132.76 humidity 90 4320 < th dose independent rect. 7 1
336 132.94 wind 1 43200 > th dose independent rect. 4 8
351 133.15 wind 1 43200 > th dose independent rect. 6 3
353 133.15 humidity 70 720 > th dose independent rect. 19 8
354 133.15 wind 1 720 > th dose independent rect. 2 9
361 133.23 radiation 40 720 > th dose independent rect. 8 1
411 133.48 wind 9 1440 < th dose dependent rect. 6 1
422 133.58 radiation 10 1440 < th dose dependent rect. 19 10
423 133.59 wind 1 43200 < th dose dependent rect. 6 5
491 134.05 wind 1 720 < th dose independent rect. 2 6
492 134.05 wind 1 720 > th dose dependent rect. 15 1
514 134.10 wind 1 43200 > th dose independent rect. 2 11
530 134.24 radiation 1 270 < th dose dependent rect. 10 19
531 134.25 wind 1 43200 > th dose independent sin 5 NA
532 134.25 radiation 1 270 < th dose independent rect. 10 19
533 134.25 temperature 30 720 > th dose dependent rect. 18 1
550 134.27 radiation 1 10 < th dose dependent rect. 4 12
551 134.28 wind 1 43200 > th dose independent rect. 23 13
613 134.56 radiation 40 1440 < th dose independent rect. 1 8
619 134.59 wind 1 720 < th dose independent rect. 2 8
643 134.72 humidity 70 720 < th dose independent rect. 19 1
650 134.72 radiation 1 720 > th dose independent rect. 8 7
658 134.73 radiation 40 1440 < th dose independent rect. 4 5
668 134.77 humidity 80 270 > th dose independent rect. 11 18
669 134.77 humidity 80 4320 > th dose dependent rect. 8 1
675 134.79 wind 1 720 < th dose independent rect. 2 10
698 134.93 radiation 10 1440 < th dose dependent rect. 4 1
700 134.95 humidity 70 720 > th dose independent rect. 18 14
705 134.97 humidity 70 720 < th dose dependent rect. 19 1
737 135.08 radiation 40 1440 < th dose independent rect. 19 14
750 135.14 wind 1 1440 > th dose dependent rect. 6 1
753 135.17 wind 1 43200 < th dose independent rect. 4 9
766 135.19 wind 1 43200 > th dose independent rect. 11 21
773 135.21 wind 1 43200 > th dose independent rect. 16 19
774 135.22 temperature 30 720 > th dose independent rect. 18 1
813 135.26 radiation 40 1440 < th dose independent rect. 17 16
825 135.31 wind 1 720 < th dose independent rect. 5 13
828 135.31 radiation 20 270 < th dose dependent rect. 11 18
830 135.32 radiation 40 1440 < th dose independent rect. 21 12
837 135.33 wind 1 43200 < th dose dependent rect. 4 9
841 135.34 wind 1 43200 < th dose independent rect. 23 14
862 135.36 wind 1 720 < th dose independent rect. 5 16
868 135.38 wind 1 43200 < th dose independent rect. 21 16
884 135.43 humidity 90 720 > th dose independent rect. 12 1
891 135.43 humidity 90 720 > th dose dependent rect. 12 1
897 135.44 radiation 10 1440 < th dose dependent rect. 21 8
935 135.56 wind 1 43200 < th dose dependent rect. 4 19
963 135.62 humidity 80 270 > th dose independent rect. 11 4
967 135.62 humidity 80 4320 > th dose dependent rect. 6 6
970 135.63 radiation 1 1440 < th dose independent rect. 19 10
972 135.63 radiation 1 720 > th dose dependent rect. 4 2
988 135.65 wind 1 43200 < th dose dependent rect. 2 21
996 135.67 wind 1 43200 < th dose independent rect. 10 22